From 3fc63cf8ad9ad7a22b33a512cbea259546882e58 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 3 Aug 2018 17:19:21 +0200
Subject: [PATCH] Fix typo
---
snakecnv/tools/pindel.snk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakecnv/tools/pindel.snk b/snakecnv/tools/pindel.snk
index 5cd5a36..269432c 100644
--- a/snakecnv/tools/pindel.snk
+++ b/snakecnv/tools/pindel.snk
@@ -45,7 +45,7 @@ rule pindel:
" --number_of_threads {threads}"
" --report_interchromosomal_events false"
" --minimum_support_for_event 3 -c {wildcards.chrom}:{wildcards.chrbatch}"
- " -o {wildcards.batch}/pindel/{wildcard.chrom}/{wildcards.chrbatch}/pindel_{wildcards.chrom}"
+ " -o {wildcards.batch}/pindel/{wildcards.chrom}/{wildcards.chrbatch}/pindel_{wildcards.chrom}"
" 1>{log.stdout} 2>{log.stderr}"
"""
for svtype in D TD INV RP SI LI BP CloseEndMapped INT_final;
--
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