Commits · 654e55734b1b7a5c7f5d03fbdc8e2e4099fd71fb · Philippe Bardou / cnvpipelines

Sep 04, 2019
- adding popsimulation.smk · 654e5573
  Thomas Faraut authored 5 years ago
  
  654e5573
- updating popsim · bfe01a1a
  Thomas Faraut authored 5 years ago
  
  bfe01a1a
- updating popsim in refactor · 5e939dbe
  Thomas Faraut authored 5 years ago
  
  5e939dbe
- get_batches in mergebatch kept as the old version · 8943f735
  Thomas Faraut authored 5 years ago
  
  8943f735
Sep 03, 2019
- megebatches functionnal · 9fe41545
  Thomas Faraut authored 5 years ago
  
  9fe41545
Aug 26, 2019

Preparing for simulation work-flow. · d7d57d96

Thomas Faraut authored 5 years ago

Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.

d7d57d96

Aug 19, 2019
- all snakefiles for refactor · 14de71ab
  Thomas Faraut authored 5 years ago
  
  14de71ab
Aug 16, 2019
- restoring genome.fa.gz · 129d71b4
  Thomas Faraut authored 5 years ago
  
  129d71b4
- Pulled down update to submodule_dir · 0332e6cc
  Thomas Faraut authored 5 years ago
  
  0332e6cc
- updating popsim · db52b585
  Thomas Faraut authored 5 years ago
  
  db52b585
- new implementation · 751deaec
  Thomas Faraut authored 5 years ago
  
  751deaec
- clean unused files · afec1b63
  Thomas Faraut authored 5 years ago
  
  afec1b63
- git ignores now directories names old · 3ef325dd
  Thomas Faraut authored 5 years ago
  
  3ef325dd
Aug 14, 2019
- refbundle.smk becomes master · 519a5fba
  Thomas Faraut authored 5 years ago
  
  519a5fba
- reorganization for refbundle · d325157d
  Thomas Faraut authored 5 years ago
  
  d325157d
- merging with alignsnake · d218c19b
  Thomas Faraut authored 5 years ago
  
  d218c19b
- new organization for detection · b851d15d
  Thomas Faraut authored 5 years ago
  
  b851d15d
Aug 13, 2019
- SnekamakeCommand py --> smk · 3d66929f
  Thomas Faraut authored 5 years ago
  
  3d66929f
- Merge branch 'alignsnake' of forgemia.inra.fr:svdetection/cnvpipelines into alignsnake · b423c940
  Thomas Faraut authored 5 years ago
  
  b423c940
- working align smk · 13e356e9
  Thomas Faraut authored 5 years ago
  
  13e356e9
- Merge branch 'alignsnake' of forgemia.inra.fr:svdetection/cnvpipelines into alignsnake · 4f54849d
  Thomas Faraut authored 5 years ago
  
  4f54849d
- new factorization · 7dadb6ec
  Thomas Faraut authored 5 years ago and Thomas Faraut committed 5 years ago
  
  7dadb6ec
Jul 23, 2019
- updating popsim · 040085ab
  Thomas Faraut authored 5 years ago
  
  040085ab
- small modification to application.properties · 7b232e8a
  Thomas Faraut authored 5 years ago
  
  7b232e8a
- Update README.md · 0e4df6cb
  Thomas Faraut authored 5 years ago
  
  0e4df6cb
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · e3d5a053
  Thomas Faraut authored 5 years ago
  
  e3d5a053
- Merge branch 'newinstall' to master in order to have a clean install · b67a30bd
  Thomas Faraut authored 5 years ago
  
  b67a30bd
- which compiler to use for pirs · 65fe4f95
  Thomas Faraut authored 5 years ago
  
  65fe4f95
- specifying a correct place for conda envs · 60588422
  Thomas Faraut authored 5 years ago
  
  60588422
- fixing svtyper env for mergebatch · 0bdb7b05
  Thomas Faraut authored 5 years ago
  
  0bdb7b05
Jul 22, 2019
- bug correction in genomestrip bwa index · 9665ca36
  Thomas Faraut authored 5 years ago
  
  9665ca36
- new factorization · 567b4f59
  Thomas Faraut authored 5 years ago
  
  567b4f59
Jul 11, 2019
- 4 individual test · 29062509
  Thomas Faraut authored 5 years ago
  
  29062509
- Update README.md · 7ba9bcd6
  Thomas Faraut authored 5 years ago
  
  7ba9bcd6
- Update README.md · 60d0b0a4
  Thomas Faraut authored 5 years ago
  
  60d0b0a4
- adding vcf-sort · dfc14d5d
  Thomas Faraut authored 5 years ago
  
  dfc14d5d
- removing termcolor · ce136797
  Thomas Faraut authored 5 years ago
  
  ce136797
- Update application.properties.example · 57d55004
  Thomas Faraut authored 5 years ago
  
  57d55004
- Update application.properties.example · 9374b478
  Thomas Faraut authored 5 years ago
  
  9374b478
- Update application.properties.example · efaa6a7a
  Thomas Faraut authored 5 years ago
  
  efaa6a7a

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