README.md

application.properties.example

cnvpipelines.py

config_reader.py

environment.yaml

popsim

requirements.txt

snakecnv/Snakefile

snakecnv/SnakemakeCommand.py

snakecnv/bin/bwa/bwa

snakecnv/bin/bwa/libbwa.so

snakecnv/bin/delly.py

snakecnv/bin/extractDiscSplitReads.py

snakecnv/bin/gstrip_preprocess.py

snakecnv/bin/insert_size_distro.py

snakecnv/bin/lumpy.py

snakecnv/bin/svtyper_launcher.py

snakecnv/bin/vcf-sort

snakecnv/common/SnakemakeCommand.smk

snakecnv/commonrefbundle.smk