proteinmatch.cpp

/*******************************************************************************
* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
*
* This file is part of XTPcpp.
*
*     XTPcpp is free software: you can redistribute it and/or modify
*     it under the terms of the GNU General Public License as published by
*     the Free Software Foundation, either version 3 of the License, or
*     (at your option) any later version.
*
*     XTPcpp is distributed in the hope that it will be useful,
*     but WITHOUT ANY WARRANTY; without even the implied warranty of
*     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
*     GNU General Public License for more details.
*
*     You should have received a copy of the GNU General Public License
*     along with XTPcpp.  If not, see <http://www.gnu.org/licenses/>.
*
* Contributors:
*     Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
******************************************************************************/

#include "proteinmatch.h"


ProteinMatch::ProteinMatch()
{

}

ProteinMatch::~ProteinMatch()
{
    auto it = _peptide_match_list.begin();
    while (it != _peptide_match_list.end()) {
        delete (*it);
        it++;
    }
}

const pappso::ProteinSp & ProteinMatch::getProteinSp() const {
    return _protein_sp;
}
void ProteinMatch::setEvalue(pappso::pappso_double evalue) {
    _evalue = evalue;
}

pappso::pappso_double ProteinMatch::getEvalue() const {
    return _evalue;
}
void ProteinMatch::setProteinSp(pappso::ProteinSp protein_sp) {
    _protein_sp = protein_sp;
}

bool ProteinMatch::isChecked() const {
    return _checked;
}
void ProteinMatch::setChecked(bool arg1) {
    _checked = arg1;
}
void ProteinMatch::addPeptideMatch(PeptideMatch * peptide_match) {
    _peptide_match_list.push_back(peptide_match);
}


std::vector<PeptideMatch *> & ProteinMatch::getPeptideMatchList() {
    return _peptide_match_list;
}