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Created with Raphaël 2.2.029May914Apr131018Mar17166519Feb161396526Jan221915818Dec1716131211128Nov2417147654321Oct1Apr28Mar271413108657Feb630Jan29272322212019181710863212Dec113229Nov2619161513875131Oct30282524430Sep27251918161429Aug282624232222Jul18171612109854328Jun2524232120171413730May292418138730Apr2322191520Feb141312111087430Jan1610Oct18Sep23Aug2110Jul22Jun8765430May2925242318161411Apr629Mar26986128Feb2721201716151413109876327Jan26253221Dec207Nov429Sep2827262320161230Aug25Jul2120430Jun29242321201715109829May231312xtandempipeline (3.3.4-8) wheezyxtandempipeline…xtandempipeline_3.3.4-8write mzXML stats only in expert modeheavy dimethyl label addeddetects light and intermediate dimethyl labelsisNter function addedxtandempipeline (3.3.4-7) wheezyxtandempipeline…xtandempipeline_3.3.4-7Merge branch 'master' of ssh://git@git.renater.fr:2222/xtandempipeline.gitnew comments in proticdbML file to writer alignment dir and read from itcheck that peptide is unique within proteins in peptide pos data sheetxtandempipeline (3.3.4-6) wheezyxtandempipeline…xtandempipeline_3.3.4-6fix PROTICdbML exports for the redundant peptide bugget rid of the peptide redundant functionxtandempipeline (3.3.4-5) wheezyxtandempipeline…xtandempipeline_3.3.4-5U added to the possible amino acid of protein sequencextandempipeline (3.3.4-4) wheezyxtandempipeline…xtandempipeline_3.3.4-4search peptide position using a regexp with L/I equivalencextandempipeline (3.3.4-3)xtandempipeline…xtandempipeline_3.3.4-3better warning message on bug fixesbug fix note added in the docnew package containing the BUG fixedxtandempipeline…xtandempipeline_3.3.4-2bug found by Julien Jardin fixed : peptide and peptide_pos ODS report was displaying all peptides even non valid peptidesfirst 3.3.4 package for Myosine Bodybuildéextandempipeline…xtandempipeline_3.3.4-1preparing the release of Myosine Bodybuildée (3.3.4)warning messages on weird values in pepxml filesremove unneeded importerror if retention time is not givenread precursor observed mass (precursor neutral mass)check if mzXML file is nullexception triggered if compression is enabledXPIP peptides are now written in the Peptide objectcompar method implemented for PeptideProphet isntancesparse X!Tandem hyperscoreuser interface buttons added to set minimum peptide prophet probabilitysetter added for peptide prophet paramsadd peptide filter on peptide prophet probabilitiesnew PeptideProphet class, renaming Peptide member functionsget database name for protein match coming from .pep.xml filesavoid crash reading pep.xml if value does contains strings instead of numberswitch fatal error to logger warn in case of unavailable fasta fileget sample name from the data source
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