Commits · 306af45cafc27b590bff205e2c44c7d629f6778c · PAPPSO / i2MassChroQ

May 30, 2012

Add equals function to group and subgroup · 306af45c

valot authored 12 years ago

Don't clear and addAll at each subgroup addition of groupList
Performed removed non informative sub-group after finish grouping.
Now, all work fine and are reproductibly.

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@301 b8ef2a07-7df7-436f-90b9-41648038564b

306af45c

Remove abusive debug message · 917e6a16

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@300 b8ef2a07-7df7-436f-90b9-41648038564b

917e6a16

May 29, 2012

New version, just finish to test before distributed · 1a3060ec

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@299 b8ef2a07-7df7-436f-90b9-41648038564b

1a3060ec

Conserved String for hashmap on factory, but use it to ensure unicity of... · c700a62b

valot authored 12 years ago

Conserved String for hashmap on factory, but use it to ensure unicity of object. Then equals test was performed on the pointer directly. This must increased speedly.

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@298 b8ef2a07-7df7-436f-90b9-41648038564b

c700a62b

May 25, 2012

why not ? · 659406f7

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@297 b8ef2a07-7df7-436f-90b9-41648038564b

659406f7

Used String for hashsamplescan... factory instead of reference to object. · 4182e1a9

valot authored 12 years ago

Debugging maschroml streaming writer.

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@296 b8ef2a07-7df7-436f-90b9-41648038564b

4182e1a9

May 24, 2012

performance problem fixed using hashmap · f2fedb42

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@295 b8ef2a07-7df7-436f-90b9-41648038564b

f2fedb42

big bug on grouping factories fixed · 10bf5fc0

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@294 b8ef2a07-7df7-436f-90b9-41648038564b

10bf5fc0

code more straight on return condition · 8ae53d31

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@293 b8ef2a07-7df7-436f-90b9-41648038564b

8ae53d31

adding override annotation keyword to better control heritage · 9df8a169
langella authored 12 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@292 b8ef2a07-7df7-436f-90b9-41648038564b
```
9df8a169

adding final keyword to better control heritage · a0d1808e

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@291 b8ef2a07-7df7-436f-90b9-41648038564b

a0d1808e

adding final keyword to better control heritage · cca5f0cf

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@290 b8ef2a07-7df7-436f-90b9-41648038564b

cca5f0cf

replacing equals with pure abstracted method · 2cb6eb60

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@289 b8ef2a07-7df7-436f-90b9-41648038564b

2cb6eb60

log collision event · 3ce01ea8

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@288 b8ef2a07-7df7-436f-90b9-41648038564b

3ce01ea8

log the peptide that caused the fusion · b138dda6

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@287 b8ef2a07-7df7-436f-90b9-41648038564b

b138dda6

using msRun equals function instead of sample name compare · 102225f4

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@286 b8ef2a07-7df7-436f-90b9-41648038564b

102225f4

new msRun equality check · 10c85dd4

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@285 b8ef2a07-7df7-436f-90b9-41648038564b

10c85dd4

May 23, 2012

new debug messages · 4bdd37da

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@284 b8ef2a07-7df7-436f-90b9-41648038564b

4bdd37da

reading local log4j.properties file · 68b39d42

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@283 b8ef2a07-7df7-436f-90b9-41648038564b

68b39d42

deleting sh file : automatically build with cmake · 6da38e0a

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@282 b8ef2a07-7df7-436f-90b9-41648038564b

6da38e0a

taking into account the new jar lib cxf-common-utilities-2.2.4.jar in ubuntu building process · 6f2fa525
langella authored 12 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@281 b8ef2a07-7df7-436f-90b9-41648038564b
```
6f2fa525

ceinture and bretelle in case of collision · e522332a

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@280 b8ef2a07-7df7-436f-90b9-41648038564b

e522332a

cleaning unused imports · 2b658a4b

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@279 b8ef2a07-7df7-436f-90b9-41648038564b

2b658a4b

code cleaned from unchecked or unsafe operations warnings · e361ef60

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@278 b8ef2a07-7df7-436f-90b9-41648038564b

e361ef60

xml header cleaned · 9ccad84d

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@277 b8ef2a07-7df7-436f-90b9-41648038564b

9ccad84d

OutputStreamWriter added... my fault · 867dfd2c

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@276 b8ef2a07-7df7-436f-90b9-41648038564b

867dfd2c

taking into account the new jar lib cxf-common-utilities-2.2.4.jar in ubuntu building process · 02321c2a
langella authored 12 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@275 b8ef2a07-7df7-436f-90b9-41648038564b
```
02321c2a

writing MassChroQml with smlstreamwriter to avoid domxml memory management... · 820635a3

langella authored 12 years ago

writing MassChroQml with smlstreamwriter to avoid domxml memory management problems (reported by M. Blein-Nicolas)

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@274 b8ef2a07-7df7-436f-90b9-41648038564b

820635a3

May 18, 2012

rank condor host on cpu capacity · bc04cb66

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@273 b8ef2a07-7df7-436f-90b9-41648038564b

bc04cb66

May 16, 2012

xtandempipeline (3.2.2-1) lucid; · fdca75d3

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@272 b8ef2a07-7df7-436f-90b9-41648038564b

fdca75d3

May 14, 2012

Add 3.2.2 release · 79bc4d99

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@271 b8ef2a07-7df7-436f-90b9-41648038564b

79bc4d99

Correct printing input parameter on xml output of xtandem · 8147fc7a

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@270 b8ef2a07-7df7-436f-90b9-41648038564b

8147fc7a

Apr 11, 2012

Upgraded to mascotdatfile 3.2.10 · 14ece091

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@269 b8ef2a07-7df7-436f-90b9-41648038564b

14ece091

Apr 06, 2012

xtandempipeline (3.2.1-1) lucid; · 9231b355

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@268 b8ef2a07-7df7-436f-90b9-41648038564b

9231b355

new version · 3587ff5c

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@267 b8ef2a07-7df7-436f-90b9-41648038564b

3587ff5c

Little error · 4a721279

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@266 b8ef2a07-7df7-436f-90b9-41648038564b

4a721279

3.2.1 realased of tubuline étayée · 61d64dbc

valot authored 13 years ago

Add news and version on main

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@265 b8ef2a07-7df7-436f-90b9-41648038564b

61d64dbc

Mar 29, 2012

Correct refine parameter by default · d6c8d82e

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@264 b8ef2a07-7df7-436f-90b9-41648038564b

d6c8d82e

Correct MsRunSet instance by replacing String dot DataSource · 2fc8d3b3

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@263 b8ef2a07-7df7-436f-90b9-41648038564b

2fc8d3b3

Mar 26, 2012

creation of a new DataSource dedicated to PROTICport msRuns · 1152cfac

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@262 b8ef2a07-7df7-436f-90b9-41648038564b

1152cfac

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