cleaning unused imports

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@279 b8ef2a07-7df7-436f-90b9-41648038564b

xtandempipeline/src/fr/inra/pappso/xtandempipeline/thread/printing_base.java

@@ -2,7 +2,6 @@ package fr.inra.pappso.xtandempipeline.thread;
 
 import java.io.File;
 import java.io.FileOutputStream;
-import java.io.OutputStream;
 import java.util.ArrayList;
 import java.util.HashSet;
 
@@ -21,7 +20,6 @@ import fr.inra.pappso.xtandempipeline.filter_print.print_pepnovo;
 import fr.inra.pappso.xtandempipeline.sax_parse.MassChroQmlOutput;
 import fr.inra.pappso.xtandempipeline.sax_parse.msms_output;
 import fr.inra.pappso.xtandempipeline.sax_parse.proticdbml;
-import fr.inra.pappso.xtandempipeline.sax_parse.MassChroQML;
 
 public class printing_base extends process {
 
@@ -54,11 +52,11 @@ public class printing_base extends process {
 
 		if (conf.get_export_ods()) {
 			this.set_view("Printing Open Document Spreadsheet file results");
-			
+
 			OdsDocWriter doc = this.ods_specific_printing(this.getfileout()
 					.getAbsolutePath() + ".ods");
 			doc.close();
-					
+
 		}
 
 		if (conf.get_export_proticdbml()) {
@@ -113,16 +111,14 @@ public class printing_base extends process {
 			output.open(this.getfileout().getAbsolutePath()
 					+ "_fdr_peptide.txt");
 			calculation_peptide_fdr_distribution calc = new calculation_peptide_fdr_distribution();
-			calc.execute(this.identifications.get(0)
-					.get_protein_liste());
+			calc.execute(this.identifications.get(0).get_protein_liste());
 			calc.print_peptide_fdr_distribution(output);
 			output.close();
 
 			output.open(this.getfileout().getAbsolutePath()
 					+ "_fdr_protein.txt");
 			calculation_protein_fdr_distribution calc2 = new calculation_protein_fdr_distribution();
-			calc2.execute(this.identifications.get(0)
-					.get_protein_liste());
+			calc2.execute(this.identifications.get(0).get_protein_liste());
 			calc2.print_protein_fdr_distribution(output);
 			output.close();
 
@@ -132,16 +128,17 @@ public class printing_base extends process {
 			throw new StopException("");
 		this.add_current_progress();
 
-		if ((conf.get_export_masschroq())
-				& (this.identifications.size() == 1)) {
+		if ((conf.get_export_masschroq()) & (this.identifications.size() == 1)) {
 			this.set_view("Printing MassChroQ xml file results");
 			Identification ident = this.identifications.get(0);
 			// modification isotopic
 			ident.filtered_match(new filter_isotopic_modifs(this.isotopic_mods));
-			
-			MassChroQmlOutput massChroQmlOutput = new MassChroQmlOutput(this.isotopic_mods, ident);
-			FileOutputStream outputStream = new FileOutputStream(new File(this.getfileout()
-					.getAbsolutePath() + ".masschroqML"));;
+
+			MassChroQmlOutput massChroQmlOutput = new MassChroQmlOutput(
+					this.isotopic_mods, ident);
+			FileOutputStream outputStream = new FileOutputStream(new File(this
+					.getfileout().getAbsolutePath() + ".masschroqML"));
+			;
 			massChroQmlOutput.write(outputStream);
 		}
 
@@ -151,7 +148,8 @@ public class printing_base extends process {
 
 	}
 
-	protected OdsDocWriter ods_specific_printing(String filename) throws Exception {
+	protected OdsDocWriter ods_specific_printing(String filename)
+			throws Exception {
 		return null;
 	}