Commits · 2af2709a3b83b458d9856f363a38702087ef77df · PAPPSO / i2MassChroQ · GitLab

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Sep 23, 2019
- removing const · 2af2709a
  Langella Olivier authored 5 years ago
  
  2af2709a
Sep 17, 2019
- WIP: writing q-values in ODS file · c9ce7ea2
  Langella Olivier authored 5 years ago
  
  c9ce7ea2
Sep 05, 2019
- q-value can be computed on Mascot results · 6b7a60c1
  Langella Olivier authored 5 years ago
  
  6b7a60c1
- better code to check peptide validity, new tooltips very helpfull in dialog box · c11368ee
  Langella Olivier authored 5 years ago
  
  c11368ee
- use size_t instead of unsigned int to count · cf0f0a31
  Langella Olivier authored 5 years ago
  
  cf0f0a31
- first running version with filter on q-value · 25f409fc
  Langella Olivier authored 5 years ago
  
  25f409fc
- first running version with filter on q-value · 4fd1bcd4
  Langella Olivier authored 5 years ago
  
  4fd1bcd4
Sep 04, 2019
- WIP: new utils function to compute FDR in one place... and may be change it easily · e0f889c0
  Langella Olivier authored 5 years ago
  
  e0f889c0
- computing q-values for tandem identifications · 5eb5b095
  Langella Olivier authored 5 years ago
  
  5eb5b095
- WIP: computing q-values · 5f56a0d8
  Langella Olivier authored 5 years ago
  
  5f56a0d8
Sep 03, 2019
- FDR computation not obvious, keeping legacy method · 1c673941
  Langella Olivier authored 5 years ago
  
  1c673941
Aug 22, 2019
- better error messages, MS run file check is made by workerthread · fdc69f0e
  Langella Olivier authored 5 years ago
  
  fdc69f0e
Aug 05, 2019
- use of contaminant removal mode in projects, read and write new contaminant... · 29e445f6
  Langella Olivier authored 5 years ago
  
  use of contaminant removal mode in projects, read and write new contaminant removal mode from XPIP files
  29e445f6
Jul 29, 2019
- new feature to take into account different ways of removing contaminants · 321afbbe
  Langella Olivier authored 5 years ago
  
  321afbbe
Jul 16, 2019
- preparing 0.2.39 · 648354fb
  Langella Olivier authored 5 years ago
  
  648354fb
- generate mcqml without peptide labels: needs test · b4b7b1af
  Langella Olivier authored 5 years ago
  
  b4b7b1af
Jul 05, 2019
- find spectrum directly by index if scan number is not supported · 5ab5980f
  Langella Olivier authored 5 years ago
  
  5ab5980f
Jun 18, 2019
- xtpcpp (0.2.38-4) stretch · c3a3762d
  Langella Olivier authored 5 years ago
  
  xtpcpp_0.2.38-4
  
  c3a3762d
- xtpcpp (0.2.38-3) stretch · 0b1219d8
  Langella Olivier authored 5 years ago
  
  xtpcpp_0.2.38-3
  
  0b1219d8
- xtpcpp (0.2.38-2) stretch · 2609d986
  Langella Olivier authored 5 years ago
  
  xtpcpp_0.2.38-2
  
  2609d986
Jun 14, 2019
- progress bar to look for best msrun retention time · e99f8ce8
  Langella Olivier authored 5 years ago
  
  e99f8ce8
Jun 13, 2019
- accepts tandem TPP version · 51648010
  Langella Olivier authored 5 years ago
  
  51648010
- GUI updated to choose msrun for alignment either automatic or manual · a539f35a
  Langella Olivier authored 5 years ago
  
  a539f35a
- first msrun reference finder · 6d2a9bb6
  Langella Olivier authored 5 years ago
  
  6d2a9bb6
- tpp tandem version compliant · d3d09069
  Langella Olivier authored 5 years ago
  
  d3d09069
Jun 12, 2019
- stronger tandem parameter file parser · 08a7e39e
  Langella Olivier authored 5 years ago
  
  08a7e39e
- stronger tandem parameter file parser · 8a796ad0
  Langella Olivier authored 5 years ago
  
  8a796ad0
- wip: accept weak tandem parameter files · 8271f8f9
  Langella Olivier authored 5 years ago
  
  8271f8f9
Jun 10, 2019
- preparing msrun retention time · 69890826
  Langella Olivier authored 5 years ago
  
  69890826
- build retention times for msruns only with valid peptide evidences · e2059af6
  Langella Olivier authored 5 years ago
  
  e2059af6
- WIP: finding best msrun for alignment reference · 83e75fdc
  Langella Olivier authored 5 years ago
  
  83e75fdc
Jun 09, 2019
- WIP: using msrunretention object · 9225e6b9
  Langella Olivier authored 5 years ago
  
  9225e6b9
- WIP: using msrunretention object · cd0259e3
  Langella Olivier authored 5 years ago
  
  cd0259e3
Jun 06, 2019
- flush output stream before closing it · 7fb24ede
  Langella Olivier authored 5 years ago
  
  7fb24ede
- new pappso ms ++ API updates · 87678884
  Langella Olivier authored 5 years ago
  
  87678884
- WIP: using new pappsoms++ library · 98f77814
  Langella Olivier authored 5 years ago
  
  98f77814
May 17, 2019
- use real msrun xml id · cf0257e1
  Langella Olivier authored 5 years ago
  
  cf0257e1
May 09, 2019
- first test OK with new pappso ms ++ library · bd4f789b
  Langella Olivier authored 5 years ago
  
  bd4f789b
May 08, 2019
- WIP: scan number modifications · 65081f70
  Langella Olivier authored 5 years ago
  
  65081f70
- WIP: replacing scan number by index · 8be1c1d8
  Langella Olivier authored 5 years ago
  
  8be1c1d8