new pappso ms ++ API updates

src/core/identification_sources/identificationdatasource.cpp

@@ -201,7 +201,8 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
     {
       scan_number = scan_number - 1;
     }
-  pappso::MsRunReaderSp msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSp();
+  pappso::MsRunReaderSPtr msrun_reader_sp =
+    _ms_run_sp.get()->getMsRunReaderSPtr();
 
   if(msrun_reader_sp == nullptr)
     {
@@ -212,7 +213,7 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
               .arg(_ms_run_sp.get()->getFileName()));
         }
     }
-  msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSp();
+  msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSPtr();
   if(msrun_reader_sp == nullptr)
     {
       throw pappso::ExceptionNotFound(
@@ -224,7 +225,7 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
   // qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__  <<
   // _ms_run_sp.get()->getMsRunReaderSp().get()->getSpectrumListSize();
 
-  qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ ;
+  qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
   std::size_t spectrum_index =
     msrun_reader_sp.get()->scanNumber2SpectrumIndex(scan_number);
   qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ << " "

src/gui/peptide_list_view/peptidetableproxymodel.cpp

@@ -146,7 +146,7 @@ PeptideTableProxyModel::filterAcceptsRow(int source_row,
             {
               msrun_ok = false;
               if(peptide_evidence->getMsRunP()
-                   ->getFilename()
+                   ->getFileName()
                    .toLower()
                    .contains(file_search_string))
                 {