Commits · 08a7e39e97b140d428862d889bfc96c9fd0c7858 · PAPPSO / i2MassChroQ · GitLab

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A compter du 1er avril, attention à vos pipelines : Nouvelles limitations de Docker Hub

Jun 12, 2019
- stronger tandem parameter file parser · 08a7e39e
  Langella Olivier authored 5 years ago
  
  08a7e39e
- stronger tandem parameter file parser · 8a796ad0
  Langella Olivier authored 5 years ago
  
  8a796ad0
- wip: accept weak tandem parameter files · 8271f8f9
  Langella Olivier authored 5 years ago
  
  8271f8f9
Jun 10, 2019
- preparing msrun retention time · 69890826
  Langella Olivier authored 5 years ago
  
  69890826
- build retention times for msruns only with valid peptide evidences · e2059af6
  Langella Olivier authored 5 years ago
  
  e2059af6
- WIP: finding best msrun for alignment reference · 83e75fdc
  Langella Olivier authored 5 years ago
  
  83e75fdc
Jun 09, 2019
- WIP: using msrunretention object · 9225e6b9
  Langella Olivier authored 5 years ago
  
  9225e6b9
- WIP: using msrunretention object · cd0259e3
  Langella Olivier authored 5 years ago
  
  cd0259e3
Jun 06, 2019
- flush output stream before closing it · 7fb24ede
  Langella Olivier authored 5 years ago
  
  7fb24ede
- new pappso ms ++ API updates · 87678884
  Langella Olivier authored 5 years ago
  
  87678884
- WIP: using new pappsoms++ library · 98f77814
  Langella Olivier authored 5 years ago
  
  98f77814
May 17, 2019
- use real msrun xml id · cf0257e1
  Langella Olivier authored 5 years ago
  
  cf0257e1
May 09, 2019
- first test OK with new pappso ms ++ library · bd4f789b
  Langella Olivier authored 5 years ago
  
  bd4f789b
May 08, 2019
- WIP: scan number modifications · 65081f70
  Langella Olivier authored 5 years ago
  
  65081f70
- WIP: replacing scan number by index · 8be1c1d8
  Langella Olivier authored 5 years ago
  
  8be1c1d8
May 07, 2019
- new PAPPSO C++ library · 1007066a
  Langella Olivier authored 5 years ago
  
  1007066a
May 01, 2019
- WIP: new xic extractor API · 357e9b7c
  Langella Olivier authored 5 years ago
  
  357e9b7c
Apr 30, 2019
- WIP: adapting xtpcpp to new PAPPSOms++ library · 62ead640
  Langella Olivier authored 5 years ago
  
  62ead640
- WIP: adapting xtpcpp to new PAPPSOms++ library · 5dcefe18
  Langella Olivier authored 5 years ago
  
  5dcefe18
Apr 16, 2019
- give fasta file aboslute path in the error message · 4e2205b7
  Langella Olivier authored 5 years ago
  
  4e2205b7
Mar 22, 2019
- new filter on peprepro seems OK · 67195bf0
  Langella Olivier authored 6 years ago
  
  67195bf0
- pragma once · 17cafb2f
  Langella Olivier authored 6 years ago
  
  17cafb2f
Mar 21, 2019
- new filter parameter for peprepro · 97777e6a
  Langella Olivier authored 6 years ago
  
  97777e6a
Mar 16, 2019
- fix nter flanking region · f6e610fd
  Langella Olivier authored 6 years ago
  
  f6e610fd
- nter and cter flanking region in ODS export · 18eb0327
  Langella Olivier authored 6 years ago
  
  18eb0327
- beter nter flanking · 00e380f4
  Langella Olivier authored 6 years ago
  
  00e380f4
- get flanking region works · f37bbda4
  Langella Olivier authored 6 years ago
  
  f37bbda4
- remove obsolete function · f48cf965
  Langella Olivier authored 6 years ago
  
  f48cf965
Feb 14, 2019
- option to use buffered xic extractor · e5d12a9b
  Langella Olivier authored 6 years ago
  
  e5d12a9b
Feb 05, 2019
- new debug messages · d3cf1445
  Langella Olivier authored 6 years ago
  
  d3cf1445
- indentation · de916736
  Langella Olivier authored 6 years ago
  
  de916736
Feb 02, 2019
- WIP: adapt code to the new pappsoMS++ code policy · 1d45b982
  Langella Olivier authored 6 years ago
  
  1d45b982
Jan 28, 2019
- checking MS run file path completed · 2ff2145d
  Langella Olivier authored 6 years ago
  
  2ff2145d
Jan 11, 2019
- check for write permission on fasta files : this is odd, nut required by X\!Tandem · ba93c240
  Langella Olivier authored 6 years ago
  
  ba93c240
Dec 13, 2018
- accept empty labels for unmodified peptides · 3252eb6b
  Langella Olivier authored 6 years ago
  
  3252eb6b
Nov 09, 2018
- display separately fdr on psm and on peptides · 3862ecde
  Langella Olivier authored 6 years ago
  
  3862ecde
Nov 02, 2018
- celenocysteine added · 753e03ee
  Langella Olivier authored 6 years ago
  
  753e03ee
- fix forgotten ALanine · 4b157024
  Langella Olivier authored 6 years ago
  
  4b157024
Oct 30, 2018
- write FDR in ODS file as percentage, compute peptide FDR on all proteins · 444110bc
  Langella Olivier authored 6 years ago
  
  444110bc
Oct 29, 2018
- count peptide directly without protein validity · 2b860768
  Langella Olivier authored 6 years ago
  
  2b860768