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Commit a2b7feff authored by Langella Olivier's avatar Langella Olivier
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protein form is OK

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src/gui/edit_tandem_preset_dialog/edit_tandem_preset_dialog.ui
+ 173
− 8
View file @ a2b7feff
...@@ -571,6 +571,41 @@ ...@@ -571,6 +571,41 @@
<layout class="QVBoxLayout" name="verticalLayout_6"> <layout class="QVBoxLayout" name="verticalLayout_6">
<item> <item>
<layout class="QGridLayout" name="gridLayout_3"> <layout class="QGridLayout" name="gridLayout_3">
<item row="9" column="0">
<widget class="QLabel" name="label_25">
<property name="text">
<string>Interpretation of peptide phosphorylation model</string>
</property>
</widget>
</item>
<item row="7" column="2">
<widget class="QComboBox" name="pqa_combo_box">
<item>
<property name="text">
<string>yes</string>
</property>
</item>
<item>
<property name="text">
<string>no</string>
</property>
</item>
</widget>
</item>
<item row="8" column="0">
<widget class="QLabel" name="label_24">
<property name="text">
<string>Protein N-terminus cyclisation</string>
</property>
</widget>
</item>
<item row="7" column="0">
<widget class="QLabel" name="label_23">
<property name="text">
<string>Protein N-terminus common modifications</string>
</property>
</widget>
</item>
<item row="3" column="2"> <item row="3" column="2">
<widget class="QLineEdit" name="pcntmc_edit"/> <widget class="QLineEdit" name="pcntmc_edit"/>
</item> </item>
...@@ -663,19 +698,19 @@ ...@@ -663,19 +698,19 @@
<item row="2" column="2"> <item row="2" column="2">
<widget class="QLineEdit" name="pcctmc_edit"/> <widget class="QLineEdit" name="pcctmc_edit"/>
</item> </item>
<item row="5" column="0"> <item row="6" column="2">
<widget class="QLineEdit" name="pntrmm_edit"/>
</item>
<item row="4" column="2">
<widget class="QLineEdit" name="pctrmm_edit"/>
</item>
<item row="6" column="0">
<widget class="QLabel" name="label_22"> <widget class="QLabel" name="label_22">
<property name="text"> <property name="text">
<string>Moiety added to protein N-terminus</string> <string>Moiety added to protein N-terminus</string>
</property> </property>
</widget> </widget>
</item> </item>
<item row="4" column="2">
<widget class="QLineEdit" name="pctrmm_edit"/>
</item>
<item row="5" column="2">
<widget class="QLineEdit" name="pntrmm_edit"/>
</item>
<item row="4" column="3"> <item row="4" column="3">
<widget class="QPushButton" name="pctrmm_push_button"> <widget class="QPushButton" name="pctrmm_push_button">
<property name="text"> <property name="text">
...@@ -683,13 +718,79 @@ ...@@ -683,13 +718,79 @@
</property> </property>
</widget> </widget>
</item> </item>
<item row="5" column="3"> <item row="6" column="3">
<widget class="QPushButton" name="pntrmm_push_button"> <widget class="QPushButton" name="pntrmm_push_button">
<property name="text"> <property name="text">
<string>?</string> <string>?</string>
</property> </property>
</widget> </widget>
</item> </item>
<item row="9" column="2">
<widget class="QComboBox" name="pstpb_combo_box">
<item>
<property name="text">
<string>yes</string>
</property>
</item>
<item>
<property name="text">
<string>no</string>
</property>
</item>
</widget>
</item>
<item row="8" column="2">
<widget class="QComboBox" name="pqp_combo_box">
<item>
<property name="text">
<string>yes</string>
</property>
</item>
<item>
<property name="text">
<string>no</string>
</property>
</item>
</widget>
</item>
<item row="10" column="0">
<widget class="QLabel" name="label_26">
<property name="text">
<string>Modify the residue masses of one or all amino acids</string>
</property>
</widget>
</item>
<item row="10" column="2">
<widget class="QLineEdit" name="pmrmf_edit"/>
</item>
<item row="7" column="3">
<widget class="QPushButton" name="pqa_push_button">
<property name="text">
<string>?</string>
</property>
</widget>
</item>
<item row="8" column="3">
<widget class="QPushButton" name="pqp_push_button">
<property name="text">
<string>?</string>
</property>
</widget>
</item>
<item row="9" column="3">
<widget class="QPushButton" name="pstpb_push_button">
<property name="text">
<string>?</string>
</property>
</widget>
</item>
<item row="10" column="3">
<widget class="QPushButton" name="pmrmf_push_button">
<property name="text">
<string>?</string>
</property>
</widget>
</item>
</layout> </layout>
</item> </item>
<item> <item>
...@@ -1298,6 +1399,70 @@ ...@@ -1298,6 +1399,70 @@
</hint> </hint>
</hints> </hints>
</connection> </connection>
<connection>
<sender>pqa_push_button</sender>
<signal>clicked()</signal>
<receiver>EditTandemPresetView</receiver>
<slot>doHelp()</slot>
<hints>
<hint type="sourcelabel">
<x>981</x>
<y>392</y>
</hint>
<hint type="destinationlabel">
<x>1521</x>
<y>405</y>
</hint>
</hints>
</connection>
<connection>
<sender>pqp_push_button</sender>
<signal>clicked()</signal>
<receiver>EditTandemPresetView</receiver>
<slot>doHelp()</slot>
<hints>
<hint type="sourcelabel">
<x>974</x>
<y>420</y>
</hint>
<hint type="destinationlabel">
<x>1521</x>
<y>432</y>
</hint>
</hints>
</connection>
<connection>
<sender>pstpb_push_button</sender>
<signal>clicked()</signal>
<receiver>EditTandemPresetView</receiver>
<slot>doHelp()</slot>
<hints>
<hint type="sourcelabel">
<x>973</x>
<y>456</y>
</hint>
<hint type="destinationlabel">
<x>1521</x>
<y>473</y>
</hint>
</hints>
</connection>
<connection>
<sender>pmrmf_push_button</sender>
<signal>clicked()</signal>
<receiver>EditTandemPresetView</receiver>
<slot>doHelp()</slot>
<hints>
<hint type="sourcelabel">
<x>976</x>
<y>482</y>
</hint>
<hint type="destinationlabel">
<x>1521</x>
<y>506</y>
</hint>
</hints>
</connection>
</connections> </connections>
<slots> <slots>
<slot>doCopy()</slot> <slot>doCopy()</slot>
......
src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp
+ 39
− 1
View file @ a2b7feff
...@@ -270,7 +270,22 @@ void EditTandemPresetDialog::doHelp() { ...@@ -270,7 +270,22 @@ void EditTandemPresetDialog::doHelp() {
{ {
html_doc.setFileName(":/tandem/resources/html_doc/pntrmm.html"); html_doc.setFileName(":/tandem/resources/html_doc/pntrmm.html");
} }
if(senderObjName == "pqa_push_button")
{
html_doc.setFileName(":/tandem/resources/html_doc/pqa.html");
}
if(senderObjName == "pqp_push_button")
{
html_doc.setFileName(":/tandem/resources/html_doc/pqp.html");
}
if(senderObjName == "pstpb_push_button")
{
html_doc.setFileName(":/tandem/resources/html_doc/pstpb.html");
}
if(senderObjName == "pmrmf_push_button")
{
html_doc.setFileName(":/tandem/resources/html_doc/pmrmf.html");
}
if (html_doc.open(QFile::ReadOnly | QFile::Text)) { if (html_doc.open(QFile::ReadOnly | QFile::Text)) {
QTextStream in(&html_doc); QTextStream in(&html_doc);
...@@ -316,6 +331,10 @@ void EditTandemPresetDialog::readUi() { ...@@ -316,6 +331,10 @@ void EditTandemPresetDialog::readUi() {
_tandem_params.setParamLabelValue("protein, cleavage semi", ui->pcsemi_combo_box->currentText()); _tandem_params.setParamLabelValue("protein, cleavage semi", ui->pcsemi_combo_box->currentText());
_tandem_params.setParamLabelValue("protein, cleavage C-terminal mass change", ui->pcctmc_edit->text()); _tandem_params.setParamLabelValue("protein, cleavage C-terminal mass change", ui->pcctmc_edit->text());
_tandem_params.setParamLabelValue("protein, cleavage N-terminal mass change", ui->pcntmc_edit->text()); _tandem_params.setParamLabelValue("protein, cleavage N-terminal mass change", ui->pcntmc_edit->text());
_tandem_params.setParamLabelValue("protein, quick acetyl", ui->pqa_combo_box->currentText());
_tandem_params.setParamLabelValue("protein, quick pyrolidone", ui->pqp_combo_box->currentText());
_tandem_params.setParamLabelValue("protein, stP bias", ui->pstpb_combo_box->currentText());
_tandem_params.setParamLabelValue("protein, modified residue mass file", ui->pmrmf_edit->text());
} }
...@@ -411,6 +430,25 @@ void EditTandemPresetDialog::populate() { ...@@ -411,6 +430,25 @@ void EditTandemPresetDialog::populate() {
ui->pctrmm_edit->setText(_tandem_params.getValue("protein, C-terminal residue modification mass")); ui->pctrmm_edit->setText(_tandem_params.getValue("protein, C-terminal residue modification mass"));
//<note type="input" label="protein, N-terminal residue modification mass">0.0</note> //<note type="input" label="protein, N-terminal residue modification mass">0.0</note>
ui->pntrmm_edit->setText(_tandem_params.getValue("protein, N-terminal residue modification mass")); ui->pntrmm_edit->setText(_tandem_params.getValue("protein, N-terminal residue modification mass"));
//<note type="input" label="protein, quick acetyl">yes</note>
index = ui->pqa_combo_box->findText(_tandem_params.getValue("protein, quick acetyl"));
if ( index != -1 ) { // -1 for not found
ui->pqa_combo_box->setCurrentIndex(index);
}
//<note type="input" label="protein, quick pyrolidone">yes</note>
index = ui->pqp_combo_box->findText(_tandem_params.getValue("protein, quick pyrolidone"));
if ( index != -1 ) { // -1 for not found
ui->pqp_combo_box->setCurrentIndex(index);
}
//<note type="input" label="protein, stP bias">yes</note>
index = ui->pstpb_combo_box->findText(_tandem_params.getValue("protein, stP bias"));
if ( index != -1 ) { // -1 for not found
ui->pstpb_combo_box->setCurrentIndex(index);
}
//<note type="input" label="protein, modified residue mass file"></note>
ui->pmrmf_edit->setText(_tandem_params.getValue("protein, modified residue mass file"));
qDebug() << "EditTandemPresetDialog::populate end"; qDebug() << "EditTandemPresetDialog::populate end";
} }
......
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