From a2b7feff8b6c540edfb8dffe94fecb878a59dbb1 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Sun, 8 Oct 2017 23:13:20 +0200
Subject: [PATCH] protein form is OK
---
.../edit_tandem_preset_dialog.ui | 181 +++++++++++++++++-
.../edittandempresetdialog.cpp | 40 +++-
2 files changed, 212 insertions(+), 9 deletions(-)
diff --git a/src/gui/edit_tandem_preset_dialog/edit_tandem_preset_dialog.ui b/src/gui/edit_tandem_preset_dialog/edit_tandem_preset_dialog.ui
index 65e1fb4ca..a6d78747e 100644
--- a/src/gui/edit_tandem_preset_dialog/edit_tandem_preset_dialog.ui
+++ b/src/gui/edit_tandem_preset_dialog/edit_tandem_preset_dialog.ui
@@ -571,6 +571,41 @@
<layout class="QVBoxLayout" name="verticalLayout_6">
<item>
<layout class="QGridLayout" name="gridLayout_3">
+ <item row="9" column="0">
+ <widget class="QLabel" name="label_25">
+ <property name="text">
+ <string>Interpretation of peptide phosphorylation model</string>
+ </property>
+ </widget>
+ </item>
+ <item row="7" column="2">
+ <widget class="QComboBox" name="pqa_combo_box">
+ <item>
+ <property name="text">
+ <string>yes</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>no</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="8" column="0">
+ <widget class="QLabel" name="label_24">
+ <property name="text">
+ <string>Protein N-terminus cyclisation</string>
+ </property>
+ </widget>
+ </item>
+ <item row="7" column="0">
+ <widget class="QLabel" name="label_23">
+ <property name="text">
+ <string>Protein N-terminus common modifications</string>
+ </property>
+ </widget>
+ </item>
<item row="3" column="2">
<widget class="QLineEdit" name="pcntmc_edit"/>
</item>
@@ -663,19 +698,19 @@
<item row="2" column="2">
<widget class="QLineEdit" name="pcctmc_edit"/>
</item>
- <item row="5" column="0">
+ <item row="6" column="2">
+ <widget class="QLineEdit" name="pntrmm_edit"/>
+ </item>
+ <item row="4" column="2">
+ <widget class="QLineEdit" name="pctrmm_edit"/>
+ </item>
+ <item row="6" column="0">
<widget class="QLabel" name="label_22">
<property name="text">
<string>Moiety added to protein N-terminus</string>
</property>
</widget>
</item>
- <item row="4" column="2">
- <widget class="QLineEdit" name="pctrmm_edit"/>
- </item>
- <item row="5" column="2">
- <widget class="QLineEdit" name="pntrmm_edit"/>
- </item>
<item row="4" column="3">
<widget class="QPushButton" name="pctrmm_push_button">
<property name="text">
@@ -683,13 +718,79 @@
</property>
</widget>
</item>
- <item row="5" column="3">
+ <item row="6" column="3">
<widget class="QPushButton" name="pntrmm_push_button">
<property name="text">
<string>?</string>
</property>
</widget>
</item>
+ <item row="9" column="2">
+ <widget class="QComboBox" name="pstpb_combo_box">
+ <item>
+ <property name="text">
+ <string>yes</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>no</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="8" column="2">
+ <widget class="QComboBox" name="pqp_combo_box">
+ <item>
+ <property name="text">
+ <string>yes</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>no</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="10" column="0">
+ <widget class="QLabel" name="label_26">
+ <property name="text">
+ <string>Modify the residue masses of one or all amino acids</string>
+ </property>
+ </widget>
+ </item>
+ <item row="10" column="2">
+ <widget class="QLineEdit" name="pmrmf_edit"/>
+ </item>
+ <item row="7" column="3">
+ <widget class="QPushButton" name="pqa_push_button">
+ <property name="text">
+ <string>?</string>
+ </property>
+ </widget>
+ </item>
+ <item row="8" column="3">
+ <widget class="QPushButton" name="pqp_push_button">
+ <property name="text">
+ <string>?</string>
+ </property>
+ </widget>
+ </item>
+ <item row="9" column="3">
+ <widget class="QPushButton" name="pstpb_push_button">
+ <property name="text">
+ <string>?</string>
+ </property>
+ </widget>
+ </item>
+ <item row="10" column="3">
+ <widget class="QPushButton" name="pmrmf_push_button">
+ <property name="text">
+ <string>?</string>
+ </property>
+ </widget>
+ </item>
</layout>
</item>
<item>
@@ -1298,6 +1399,70 @@
</hint>
</hints>
</connection>
+ <connection>
+ <sender>pqa_push_button</sender>
+ <signal>clicked()</signal>
+ <receiver>EditTandemPresetView</receiver>
+ <slot>doHelp()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>981</x>
+ <y>392</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>1521</x>
+ <y>405</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>pqp_push_button</sender>
+ <signal>clicked()</signal>
+ <receiver>EditTandemPresetView</receiver>
+ <slot>doHelp()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>974</x>
+ <y>420</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>1521</x>
+ <y>432</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>pstpb_push_button</sender>
+ <signal>clicked()</signal>
+ <receiver>EditTandemPresetView</receiver>
+ <slot>doHelp()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>973</x>
+ <y>456</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>1521</x>
+ <y>473</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>pmrmf_push_button</sender>
+ <signal>clicked()</signal>
+ <receiver>EditTandemPresetView</receiver>
+ <slot>doHelp()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>976</x>
+ <y>482</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>1521</x>
+ <y>506</y>
+ </hint>
+ </hints>
+ </connection>
</connections>
<slots>
<slot>doCopy()</slot>
diff --git a/src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp b/src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp
index b66698780..ef7e66367 100644
--- a/src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp
+++ b/src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp
@@ -270,7 +270,22 @@ void EditTandemPresetDialog::doHelp() {
{
html_doc.setFileName(":/tandem/resources/html_doc/pntrmm.html");
}
-
+ if(senderObjName == "pqa_push_button")
+ {
+ html_doc.setFileName(":/tandem/resources/html_doc/pqa.html");
+ }
+ if(senderObjName == "pqp_push_button")
+ {
+ html_doc.setFileName(":/tandem/resources/html_doc/pqp.html");
+ }
+ if(senderObjName == "pstpb_push_button")
+ {
+ html_doc.setFileName(":/tandem/resources/html_doc/pstpb.html");
+ }
+ if(senderObjName == "pmrmf_push_button")
+ {
+ html_doc.setFileName(":/tandem/resources/html_doc/pmrmf.html");
+ }
if (html_doc.open(QFile::ReadOnly | QFile::Text)) {
QTextStream in(&html_doc);
@@ -316,6 +331,10 @@ void EditTandemPresetDialog::readUi() {
_tandem_params.setParamLabelValue("protein, cleavage semi", ui->pcsemi_combo_box->currentText());
_tandem_params.setParamLabelValue("protein, cleavage C-terminal mass change", ui->pcctmc_edit->text());
_tandem_params.setParamLabelValue("protein, cleavage N-terminal mass change", ui->pcntmc_edit->text());
+ _tandem_params.setParamLabelValue("protein, quick acetyl", ui->pqa_combo_box->currentText());
+ _tandem_params.setParamLabelValue("protein, quick pyrolidone", ui->pqp_combo_box->currentText());
+ _tandem_params.setParamLabelValue("protein, stP bias", ui->pstpb_combo_box->currentText());
+ _tandem_params.setParamLabelValue("protein, modified residue mass file", ui->pmrmf_edit->text());
}
@@ -411,6 +430,25 @@ void EditTandemPresetDialog::populate() {
ui->pctrmm_edit->setText(_tandem_params.getValue("protein, C-terminal residue modification mass"));
//<note type="input" label="protein, N-terminal residue modification mass">0.0</note>
ui->pntrmm_edit->setText(_tandem_params.getValue("protein, N-terminal residue modification mass"));
+
+ //<note type="input" label="protein, quick acetyl">yes</note>
+ index = ui->pqa_combo_box->findText(_tandem_params.getValue("protein, quick acetyl"));
+ if ( index != -1 ) { // -1 for not found
+ ui->pqa_combo_box->setCurrentIndex(index);
+ }
+ //<note type="input" label="protein, quick pyrolidone">yes</note>
+ index = ui->pqp_combo_box->findText(_tandem_params.getValue("protein, quick pyrolidone"));
+ if ( index != -1 ) { // -1 for not found
+ ui->pqp_combo_box->setCurrentIndex(index);
+ }
+ //<note type="input" label="protein, stP bias">yes</note>
+ index = ui->pstpb_combo_box->findText(_tandem_params.getValue("protein, stP bias"));
+ if ( index != -1 ) { // -1 for not found
+ ui->pstpb_combo_box->setCurrentIndex(index);
+ }
+ //<note type="input" label="protein, modified residue mass file"></note>
+ ui->pmrmf_edit->setText(_tandem_params.getValue("protein, modified residue mass file"));
+
qDebug() << "EditTandemPresetDialog::populate end";
}
--
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