From 876788849ffbced45fb24504d9809ab7a35d8715 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu, 6 Jun 2019 21:14:29 +0200
Subject: [PATCH] new pappso ms ++ API updates
---
.../identification_sources/identificationdatasource.cpp | 7 ++++---
src/gui/peptide_list_view/peptidetableproxymodel.cpp | 2 +-
2 files changed, 5 insertions(+), 4 deletions(-)
diff --git a/src/core/identification_sources/identificationdatasource.cpp b/src/core/identification_sources/identificationdatasource.cpp
index cabdf57e8..26bc4ca1f 100644
--- a/src/core/identification_sources/identificationdatasource.cpp
+++ b/src/core/identification_sources/identificationdatasource.cpp
@@ -201,7 +201,8 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
{
scan_number = scan_number - 1;
}
- pappso::MsRunReaderSp msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSp();
+ pappso::MsRunReaderSPtr msrun_reader_sp =
+ _ms_run_sp.get()->getMsRunReaderSPtr();
if(msrun_reader_sp == nullptr)
{
@@ -212,7 +213,7 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
.arg(_ms_run_sp.get()->getFileName()));
}
}
- msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSp();
+ msrun_reader_sp = _ms_run_sp.get()->getMsRunReaderSPtr();
if(msrun_reader_sp == nullptr)
{
throw pappso::ExceptionNotFound(
@@ -224,7 +225,7 @@ IdentificationDataSource::getMassSpectrumCstSPtr(unsigned int scan_number) const
// qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ <<
// _ms_run_sp.get()->getMsRunReaderSp().get()->getSpectrumListSize();
- qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ ;
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
std::size_t spectrum_index =
msrun_reader_sp.get()->scanNumber2SpectrumIndex(scan_number);
qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ << " "
diff --git a/src/gui/peptide_list_view/peptidetableproxymodel.cpp b/src/gui/peptide_list_view/peptidetableproxymodel.cpp
index 9eb0a037a..b7685c087 100644
--- a/src/gui/peptide_list_view/peptidetableproxymodel.cpp
+++ b/src/gui/peptide_list_view/peptidetableproxymodel.cpp
@@ -146,7 +146,7 @@ PeptideTableProxyModel::filterAcceptsRow(int source_row,
{
msrun_ok = false;
if(peptide_evidence->getMsRunP()
- ->getFilename()
+ ->getFileName()
.toLower()
.contains(file_search_string))
{
--
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