dont filter on protein when counting peptides

src/core/identificationgroup.cpp

@@ -49,11 +49,11 @@ IdentificationGroup::~IdentificationGroup()
 unsigned int IdentificationGroup::countDecoyPeptideMatch(ValidationState state) const {
     unsigned int i=0;
     for (auto & p_protein_match : _protein_match_list) {
-        if (p_protein_match->getValidationState() == state) {
+        //if (p_protein_match->getValidationState() == state) {
             if (p_protein_match->getProteinXtpSp().get()->isDecoy()) {
                 i+=p_protein_match->countPeptideMatch(state);
             }
-        }
+        //}
     }
     return i;
 }
@@ -71,9 +71,9 @@ unsigned int IdentificationGroup::countDecoyProteinMatch(ValidationState state)
 unsigned int IdentificationGroup::countPeptideMatch(ValidationState state) const {
     unsigned int i=0;
     for (auto & p_protein_match : _protein_match_list) {
-        if (p_protein_match->getValidationState() >= state) {
+        //if (p_protein_match->getValidationState() >= state) {
             i+=p_protein_match->countPeptideMatch(state);
-        }
+        //}
     }
     return i;
 }