From 85e3d1cf2b66952582627d3f4774a457d9b71fa2 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Wed, 19 Apr 2017 17:26:19 +0200
Subject: [PATCH] dont filter on protein when counting peptides
---
src/core/identificationgroup.cpp | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/core/identificationgroup.cpp b/src/core/identificationgroup.cpp
index c66ab899c..069a0d921 100644
--- a/src/core/identificationgroup.cpp
+++ b/src/core/identificationgroup.cpp
@@ -49,11 +49,11 @@ IdentificationGroup::~IdentificationGroup()
unsigned int IdentificationGroup::countDecoyPeptideMatch(ValidationState state) const {
unsigned int i=0;
for (auto & p_protein_match : _protein_match_list) {
- if (p_protein_match->getValidationState() == state) {
+ //if (p_protein_match->getValidationState() == state) {
if (p_protein_match->getProteinXtpSp().get()->isDecoy()) {
i+=p_protein_match->countPeptideMatch(state);
}
- }
+ //}
}
return i;
}
@@ -71,9 +71,9 @@ unsigned int IdentificationGroup::countDecoyProteinMatch(ValidationState state)
unsigned int IdentificationGroup::countPeptideMatch(ValidationState state) const {
unsigned int i=0;
for (auto & p_protein_match : _protein_match_list) {
- if (p_protein_match->getValidationState() >= state) {
+ //if (p_protein_match->getValidationState() >= state) {
i+=p_protein_match->countPeptideMatch(state);
- }
+ //}
}
return i;
}
--
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