peptide list view menu modified to export as ODS file

src/gui/peptide_list_view/peptide_view.ui

@@ -35,31 +35,6 @@
       </property>
      </widget>
     </item>
-    <item>
-     <layout class="QHBoxLayout" name="horizontalLayoutcb">
-      <item>
-       <widget class="QCheckBox" name="hideNotValidCheckBox">
-        <property name="text">
-         <string>show only valid peptides</string>
-        </property>
-       </widget>
-      </item>
-      <item>
-       <widget class="QCheckBox" name="hideNotCheckedCheckBox">
-        <property name="text">
-         <string>show only checked peptides</string>
-        </property>
-       </widget>
-      </item>
-      <item>
-       <widget class="QCheckBox" name="hideNotGroupedCheckBox">
-        <property name="text">
-         <string>show only grouped peptides</string>
-        </property>
-       </widget>
-      </item>
-     </layout>
-    </item>
     <item>
      <widget class="QTableView" name="tableView"/>
     </item>
@@ -125,8 +100,53 @@
      <height>25</height>
     </rect>
    </property>
+   <widget class="QMenu" name="menuExport">
+    <property name="title">
+     <string>e&amp;xport</string>
+    </property>
+    <addaction name="actionAs_ODS_file"/>
+   </widget>
+   <widget class="QMenu" name="menuShow_only">
+    <property name="title">
+     <string>s&amp;how only</string>
+    </property>
+    <addaction name="actionValid_peptides"/>
+    <addaction name="actionChecked_peptides"/>
+    <addaction name="actionGrouped_peptides"/>
+   </widget>
+   <addaction name="menuExport"/>
+   <addaction name="menuShow_only"/>
   </widget>
   <widget class="QStatusBar" name="statusbar"/>
+  <action name="actionAs_ODS_file">
+   <property name="text">
+    <string>&amp;as ODS file</string>
+   </property>
+  </action>
+  <action name="actionValid_peptides">
+   <property name="checkable">
+    <bool>true</bool>
+   </property>
+   <property name="text">
+    <string>&amp;valid peptides</string>
+   </property>
+  </action>
+  <action name="actionChecked_peptides">
+   <property name="checkable">
+    <bool>true</bool>
+   </property>
+   <property name="text">
+    <string>&amp;checked peptides</string>
+   </property>
+  </action>
+  <action name="actionGrouped_peptides">
+   <property name="checkable">
+    <bool>true</bool>
+   </property>
+   <property name="text">
+    <string>&amp;grouped peptides</string>
+   </property>
+  </action>
  </widget>
  <resources/>
  <connections>
@@ -211,50 +231,66 @@
    </hints>
   </connection>
   <connection>
-   <sender>hideNotGroupedCheckBox</sender>
+   <sender>actionAs_ODS_file</sender>
+   <signal>triggered()</signal>
+   <receiver>PeptideView</receiver>
+   <slot>doExportAsOdsFile()</slot>
+   <hints>
+    <hint type="sourcelabel">
+     <x>-1</x>
+     <y>-1</y>
+    </hint>
+    <hint type="destinationlabel">
+     <x>412</x>
+     <y>201</y>
+    </hint>
+   </hints>
+  </connection>
+  <connection>
+   <sender>actionValid_peptides</sender>
    <signal>toggled(bool)</signal>
    <receiver>PeptideView</receiver>
-   <slot>doNotGroupedHide(bool)</slot>
+   <slot>doNotValidHide(bool)</slot>
    <hints>
     <hint type="sourcelabel">
-     <x>815</x>
-     <y>112</y>
+     <x>-1</x>
+     <y>-1</y>
     </hint>
     <hint type="destinationlabel">
-     <x>1079</x>
-     <y>360</y>
+     <x>412</x>
+     <y>201</y>
     </hint>
    </hints>
   </connection>
   <connection>
-   <sender>hideNotCheckedCheckBox</sender>
+   <sender>actionChecked_peptides</sender>
    <signal>toggled(bool)</signal>
    <receiver>PeptideView</receiver>
    <slot>doNotCheckedHide(bool)</slot>
    <hints>
     <hint type="sourcelabel">
-     <x>612</x>
-     <y>112</y>
+     <x>-1</x>
+     <y>-1</y>
     </hint>
     <hint type="destinationlabel">
-     <x>920</x>
-     <y>269</y>
+     <x>412</x>
+     <y>201</y>
     </hint>
    </hints>
   </connection>
   <connection>
-   <sender>hideNotValidCheckBox</sender>
+   <sender>actionGrouped_peptides</sender>
    <signal>toggled(bool)</signal>
    <receiver>PeptideView</receiver>
-   <slot>doNotValidHide(bool)</slot>
+   <slot>doNotGroupedHide(bool)</slot>
    <hints>
     <hint type="sourcelabel">
-     <x>409</x>
-     <y>112</y>
+     <x>-1</x>
+     <y>-1</y>
     </hint>
     <hint type="destinationlabel">
-     <x>839</x>
-     <y>171</y>
+     <x>412</x>
+     <y>201</y>
     </hint>
    </hints>
   </connection>
@@ -268,5 +304,6 @@
   <slot>doMsrunFileSearch(QString)</slot>
   <slot>doScanNumberSearch(int)</slot>
   <slot>doModificationSearch(QString)</slot>
+  <slot>doExportAsOdsFile()</slot>
  </slots>
 </ui>

src/gui/peptide_list_view/peptidelistwindow.cpp

@@ -23,6 +23,8 @@
  ******************************************************************************/
 
 #include <QSettings>
+#include <odsstream/odsdocwriter.h>
+#include <odsstream/qtablewriter.h>
 #include "peptidelistwindow.h"
 #include "../project_view/projectwindow.h"
 
@@ -47,7 +49,9 @@ PeptideListQactionColumn::PeptideListQactionColumn(PeptideListWindow *parent,
 
 #if QT_VERSION >= 0x050000
   // Qt5 code
-  connect(this, &PeptideListQactionColumn::toggled, this,
+  connect(this,
+          &PeptideListQactionColumn::toggled,
+          this,
           &PeptideListQactionColumn::doToggled);
 #else
   // Qt4 code
@@ -96,19 +100,19 @@ PeptideListWindow::PeptideListWindow(ProjectWindow *parent)
   bool hide = settings.value("peptideview/hidenotvalid", "true").toBool();
   if(hide)
     {
-      ui->hideNotValidCheckBox->setCheckState(Qt::Checked);
+      ui->actionValid_peptides->setChecked(Qt::Checked);
     }
   _p_proxy_model->hideNotValid(hide);
   hide = settings.value("peptideview/hidenotchecked", "false").toBool();
   if(hide)
     {
-      ui->hideNotCheckedCheckBox->setCheckState(Qt::Checked);
+      ui->actionChecked_peptides->setChecked(Qt::Checked);
     }
   _p_proxy_model->hideNotChecked(hide);
   hide = settings.value("peptideview/hidenotgrouped", "false").toBool();
   if(hide)
     {
-      ui->hideNotGroupedCheckBox->setCheckState(Qt::Checked);
+      ui->actionGrouped_peptides->setChecked(Qt::Checked);
     }
   _p_proxy_model->hideNotGrouped(hide);
 
@@ -119,30 +123,47 @@ PeptideListWindow::PeptideListWindow(ProjectWindow *parent)
 
 #if QT_VERSION >= 0x050000
   // Qt5 code
-  connect(_project_window, &ProjectWindow::identificationGroupGrouped, this,
+  connect(_project_window,
+          &ProjectWindow::identificationGroupGrouped,
+          this,
           &PeptideListWindow::doIdentificationGroupGrouped);
 
-  connect(this, &PeptideListWindow::peptideDataChanged, _peptide_table_model_p,
+  connect(this,
+          &PeptideListWindow::peptideDataChanged,
+          _peptide_table_model_p,
           &PeptideTableModel::onPeptideDataChanged);
 
-  connect(ui->tableView, &QTableView::clicked, _p_proxy_model,
+  connect(ui->tableView,
+          &QTableView::clicked,
+          _p_proxy_model,
           &PeptideTableProxyModel::onTableClicked);
-  connect(_peptide_table_model_p, &PeptideTableModel::layoutChanged, this,
+  connect(_peptide_table_model_p,
+          &PeptideTableModel::layoutChanged,
+          this,
           &PeptideListWindow::updateStatusBar);
-  connect(ui->centralwidget, &QWidget::customContextMenuRequested, this,
+  connect(ui->centralwidget,
+          &QWidget::customContextMenuRequested,
+          this,
           &PeptideListWindow::showContextMenu);
 #else
   // Qt4 code
   connect(_project_window,
-          SIGNAL(identificationGroupGrouped(IdentificationGroup *)), this,
+          SIGNAL(identificationGroupGrouped(IdentificationGroup *)),
+          this,
           SLOT(doIdentificationGroupGrouped(IdentificationGroup *)));
 
-  connect(this, SIGNAL(peptideDataChanged()), _peptide_table_model_p,
+  connect(this,
+          SIGNAL(peptideDataChanged()),
+          _peptide_table_model_p,
           SLOT(onPeptideDataChanged()));
 
-  connect(ui->tableView, SIGNAL(clicked(const QModelIndex &)), _p_proxy_model,
+  connect(ui->tableView,
+          SIGNAL(clicked(const QModelIndex &)),
+          _p_proxy_model,
           SLOT(onTableClicked(const QModelIndex &)));
-  connect(_peptide_table_model_p, SIGNAL(layoutChanged()), this,
+  connect(_peptide_table_model_p,
+          SIGNAL(layoutChanged()),
+          this,
           SLOT(updateStatusBar()));
 
   /*
@@ -417,3 +438,32 @@ PeptideListWindow::getPeptideListColumnDisplay(PeptideListColumn column) const
 {
   return _p_proxy_model->getPeptideListColumnDisplay(column);
 }
+
+void
+PeptideListWindow::doExportAsOdsFile()
+{
+  qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
+  QSettings settings;
+  QString default_location = settings.value("path/export_ods", "").toString();
+
+  QString filename;
+  filename = QFileDialog::getSaveFileName(
+    this,
+    tr("Save ODS file"),
+    QString("%1/untitled.ods").arg(default_location),
+    tr("Open Document Spreadsheet (*.ods)"));
+
+
+  CalcWriterInterface *p_writer            = new OdsDocWriter(filename);
+  const QAbstractProxyModel *p_table_model = _p_proxy_model;
+
+  QtableWriter table_writer(p_writer, p_table_model);
+
+  // table_writer.setFormatPercentForColumn(
+  //  _peptide_table_model_p->index(0, (int)ProteinListColumn::coverage));
+
+  table_writer.writeSheet("protein list");
+
+  p_writer->close();
+  delete p_writer;
+}

src/gui/peptide_list_view/peptidelistwindow.h

@@ -84,6 +84,7 @@ class PeptideListWindow : public QMainWindow
 
   protected slots:
   void showContextMenu(const QPoint &pos);
+  void doExportAsOdsFile();
 
   signals:
   void identificationGroupEdited(IdentificationGroup *p_identification_group);