diff --git a/src/gui/peptide_list_view/peptide_view.ui b/src/gui/peptide_list_view/peptide_view.ui
index dc6ee5687e517e4f85d5534853cae34bd8413ae1..1f9453a3bb2e892e5ca3c6f10e26781436cb8a0b 100644
--- a/src/gui/peptide_list_view/peptide_view.ui
+++ b/src/gui/peptide_list_view/peptide_view.ui
@@ -35,31 +35,6 @@
</property>
</widget>
</item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayoutcb">
- <item>
- <widget class="QCheckBox" name="hideNotValidCheckBox">
- <property name="text">
- <string>show only valid peptides</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QCheckBox" name="hideNotCheckedCheckBox">
- <property name="text">
- <string>show only checked peptides</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QCheckBox" name="hideNotGroupedCheckBox">
- <property name="text">
- <string>show only grouped peptides</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
<item>
<widget class="QTableView" name="tableView"/>
</item>
@@ -125,8 +100,53 @@
<height>25</height>
</rect>
</property>
+ <widget class="QMenu" name="menuExport">
+ <property name="title">
+ <string>e&xport</string>
+ </property>
+ <addaction name="actionAs_ODS_file"/>
+ </widget>
+ <widget class="QMenu" name="menuShow_only">
+ <property name="title">
+ <string>s&how only</string>
+ </property>
+ <addaction name="actionValid_peptides"/>
+ <addaction name="actionChecked_peptides"/>
+ <addaction name="actionGrouped_peptides"/>
+ </widget>
+ <addaction name="menuExport"/>
+ <addaction name="menuShow_only"/>
</widget>
<widget class="QStatusBar" name="statusbar"/>
+ <action name="actionAs_ODS_file">
+ <property name="text">
+ <string>&as ODS file</string>
+ </property>
+ </action>
+ <action name="actionValid_peptides">
+ <property name="checkable">
+ <bool>true</bool>
+ </property>
+ <property name="text">
+ <string>&valid peptides</string>
+ </property>
+ </action>
+ <action name="actionChecked_peptides">
+ <property name="checkable">
+ <bool>true</bool>
+ </property>
+ <property name="text">
+ <string>&checked peptides</string>
+ </property>
+ </action>
+ <action name="actionGrouped_peptides">
+ <property name="checkable">
+ <bool>true</bool>
+ </property>
+ <property name="text">
+ <string>&grouped peptides</string>
+ </property>
+ </action>
</widget>
<resources/>
<connections>
@@ -211,50 +231,66 @@
</hints>
</connection>
<connection>
- <sender>hideNotGroupedCheckBox</sender>
+ <sender>actionAs_ODS_file</sender>
+ <signal>triggered()</signal>
+ <receiver>PeptideView</receiver>
+ <slot>doExportAsOdsFile()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>-1</x>
+ <y>-1</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>412</x>
+ <y>201</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>actionValid_peptides</sender>
<signal>toggled(bool)</signal>
<receiver>PeptideView</receiver>
- <slot>doNotGroupedHide(bool)</slot>
+ <slot>doNotValidHide(bool)</slot>
<hints>
<hint type="sourcelabel">
- <x>815</x>
- <y>112</y>
+ <x>-1</x>
+ <y>-1</y>
</hint>
<hint type="destinationlabel">
- <x>1079</x>
- <y>360</y>
+ <x>412</x>
+ <y>201</y>
</hint>
</hints>
</connection>
<connection>
- <sender>hideNotCheckedCheckBox</sender>
+ <sender>actionChecked_peptides</sender>
<signal>toggled(bool)</signal>
<receiver>PeptideView</receiver>
<slot>doNotCheckedHide(bool)</slot>
<hints>
<hint type="sourcelabel">
- <x>612</x>
- <y>112</y>
+ <x>-1</x>
+ <y>-1</y>
</hint>
<hint type="destinationlabel">
- <x>920</x>
- <y>269</y>
+ <x>412</x>
+ <y>201</y>
</hint>
</hints>
</connection>
<connection>
- <sender>hideNotValidCheckBox</sender>
+ <sender>actionGrouped_peptides</sender>
<signal>toggled(bool)</signal>
<receiver>PeptideView</receiver>
- <slot>doNotValidHide(bool)</slot>
+ <slot>doNotGroupedHide(bool)</slot>
<hints>
<hint type="sourcelabel">
- <x>409</x>
- <y>112</y>
+ <x>-1</x>
+ <y>-1</y>
</hint>
<hint type="destinationlabel">
- <x>839</x>
- <y>171</y>
+ <x>412</x>
+ <y>201</y>
</hint>
</hints>
</connection>
@@ -268,5 +304,6 @@
<slot>doMsrunFileSearch(QString)</slot>
<slot>doScanNumberSearch(int)</slot>
<slot>doModificationSearch(QString)</slot>
+ <slot>doExportAsOdsFile()</slot>
</slots>
</ui>
diff --git a/src/gui/peptide_list_view/peptidelistwindow.cpp b/src/gui/peptide_list_view/peptidelistwindow.cpp
index 533afa4a0925949a48bb0450421cf06ef6c31a62..ab5fbd27ec9a801f29ce156e1e8bfb386d0d4118 100644
--- a/src/gui/peptide_list_view/peptidelistwindow.cpp
+++ b/src/gui/peptide_list_view/peptidelistwindow.cpp
@@ -23,6 +23,8 @@
******************************************************************************/
#include <QSettings>
+#include <odsstream/odsdocwriter.h>
+#include <odsstream/qtablewriter.h>
#include "peptidelistwindow.h"
#include "../project_view/projectwindow.h"
@@ -47,7 +49,9 @@ PeptideListQactionColumn::PeptideListQactionColumn(PeptideListWindow *parent,
#if QT_VERSION >= 0x050000
// Qt5 code
- connect(this, &PeptideListQactionColumn::toggled, this,
+ connect(this,
+ &PeptideListQactionColumn::toggled,
+ this,
&PeptideListQactionColumn::doToggled);
#else
// Qt4 code
@@ -96,19 +100,19 @@ PeptideListWindow::PeptideListWindow(ProjectWindow *parent)
bool hide = settings.value("peptideview/hidenotvalid", "true").toBool();
if(hide)
{
- ui->hideNotValidCheckBox->setCheckState(Qt::Checked);
+ ui->actionValid_peptides->setChecked(Qt::Checked);
}
_p_proxy_model->hideNotValid(hide);
hide = settings.value("peptideview/hidenotchecked", "false").toBool();
if(hide)
{
- ui->hideNotCheckedCheckBox->setCheckState(Qt::Checked);
+ ui->actionChecked_peptides->setChecked(Qt::Checked);
}
_p_proxy_model->hideNotChecked(hide);
hide = settings.value("peptideview/hidenotgrouped", "false").toBool();
if(hide)
{
- ui->hideNotGroupedCheckBox->setCheckState(Qt::Checked);
+ ui->actionGrouped_peptides->setChecked(Qt::Checked);
}
_p_proxy_model->hideNotGrouped(hide);
@@ -119,30 +123,47 @@ PeptideListWindow::PeptideListWindow(ProjectWindow *parent)
#if QT_VERSION >= 0x050000
// Qt5 code
- connect(_project_window, &ProjectWindow::identificationGroupGrouped, this,
+ connect(_project_window,
+ &ProjectWindow::identificationGroupGrouped,
+ this,
&PeptideListWindow::doIdentificationGroupGrouped);
- connect(this, &PeptideListWindow::peptideDataChanged, _peptide_table_model_p,
+ connect(this,
+ &PeptideListWindow::peptideDataChanged,
+ _peptide_table_model_p,
&PeptideTableModel::onPeptideDataChanged);
- connect(ui->tableView, &QTableView::clicked, _p_proxy_model,
+ connect(ui->tableView,
+ &QTableView::clicked,
+ _p_proxy_model,
&PeptideTableProxyModel::onTableClicked);
- connect(_peptide_table_model_p, &PeptideTableModel::layoutChanged, this,
+ connect(_peptide_table_model_p,
+ &PeptideTableModel::layoutChanged,
+ this,
&PeptideListWindow::updateStatusBar);
- connect(ui->centralwidget, &QWidget::customContextMenuRequested, this,
+ connect(ui->centralwidget,
+ &QWidget::customContextMenuRequested,
+ this,
&PeptideListWindow::showContextMenu);
#else
// Qt4 code
connect(_project_window,
- SIGNAL(identificationGroupGrouped(IdentificationGroup *)), this,
+ SIGNAL(identificationGroupGrouped(IdentificationGroup *)),
+ this,
SLOT(doIdentificationGroupGrouped(IdentificationGroup *)));
- connect(this, SIGNAL(peptideDataChanged()), _peptide_table_model_p,
+ connect(this,
+ SIGNAL(peptideDataChanged()),
+ _peptide_table_model_p,
SLOT(onPeptideDataChanged()));
- connect(ui->tableView, SIGNAL(clicked(const QModelIndex &)), _p_proxy_model,
+ connect(ui->tableView,
+ SIGNAL(clicked(const QModelIndex &)),
+ _p_proxy_model,
SLOT(onTableClicked(const QModelIndex &)));
- connect(_peptide_table_model_p, SIGNAL(layoutChanged()), this,
+ connect(_peptide_table_model_p,
+ SIGNAL(layoutChanged()),
+ this,
SLOT(updateStatusBar()));
/*
@@ -417,3 +438,32 @@ PeptideListWindow::getPeptideListColumnDisplay(PeptideListColumn column) const
{
return _p_proxy_model->getPeptideListColumnDisplay(column);
}
+
+void
+PeptideListWindow::doExportAsOdsFile()
+{
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
+ QSettings settings;
+ QString default_location = settings.value("path/export_ods", "").toString();
+
+ QString filename;
+ filename = QFileDialog::getSaveFileName(
+ this,
+ tr("Save ODS file"),
+ QString("%1/untitled.ods").arg(default_location),
+ tr("Open Document Spreadsheet (*.ods)"));
+
+
+ CalcWriterInterface *p_writer = new OdsDocWriter(filename);
+ const QAbstractProxyModel *p_table_model = _p_proxy_model;
+
+ QtableWriter table_writer(p_writer, p_table_model);
+
+ // table_writer.setFormatPercentForColumn(
+ // _peptide_table_model_p->index(0, (int)ProteinListColumn::coverage));
+
+ table_writer.writeSheet("protein list");
+
+ p_writer->close();
+ delete p_writer;
+}
diff --git a/src/gui/peptide_list_view/peptidelistwindow.h b/src/gui/peptide_list_view/peptidelistwindow.h
index 3aecc924345bfec4835131df1c3699bc8b8041c7..a0ce122fb48f7ab3d58b8e3e35a3ae571305dd22 100644
--- a/src/gui/peptide_list_view/peptidelistwindow.h
+++ b/src/gui/peptide_list_view/peptidelistwindow.h
@@ -84,6 +84,7 @@ class PeptideListWindow : public QMainWindow
protected slots:
void showContextMenu(const QPoint &pos);
+ void doExportAsOdsFile();
signals:
void identificationGroupEdited(IdentificationGroup *p_identification_group);