From 2b658a4be250896bb1cba69594fa518bf6dccb3d Mon Sep 17 00:00:00 2001
From: langella <langella@b8ef2a07-7df7-436f-90b9-41648038564b>
Date: Wed, 23 May 2012 12:18:48 +0000
Subject: [PATCH] cleaning unused imports
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@279 b8ef2a07-7df7-436f-90b9-41648038564b
---
.../xtandempipeline/thread/printing_base.java | 28 +++++++++----------
1 file changed, 13 insertions(+), 15 deletions(-)
diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/thread/printing_base.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/thread/printing_base.java
index 92f51d246..0480ba47a 100644
--- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/thread/printing_base.java
+++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/thread/printing_base.java
@@ -2,7 +2,6 @@ package fr.inra.pappso.xtandempipeline.thread;
import java.io.File;
import java.io.FileOutputStream;
-import java.io.OutputStream;
import java.util.ArrayList;
import java.util.HashSet;
@@ -21,7 +20,6 @@ import fr.inra.pappso.xtandempipeline.filter_print.print_pepnovo;
import fr.inra.pappso.xtandempipeline.sax_parse.MassChroQmlOutput;
import fr.inra.pappso.xtandempipeline.sax_parse.msms_output;
import fr.inra.pappso.xtandempipeline.sax_parse.proticdbml;
-import fr.inra.pappso.xtandempipeline.sax_parse.MassChroQML;
public class printing_base extends process {
@@ -54,11 +52,11 @@ public class printing_base extends process {
if (conf.get_export_ods()) {
this.set_view("Printing Open Document Spreadsheet file results");
-
+
OdsDocWriter doc = this.ods_specific_printing(this.getfileout()
.getAbsolutePath() + ".ods");
doc.close();
-
+
}
if (conf.get_export_proticdbml()) {
@@ -113,16 +111,14 @@ public class printing_base extends process {
output.open(this.getfileout().getAbsolutePath()
+ "_fdr_peptide.txt");
calculation_peptide_fdr_distribution calc = new calculation_peptide_fdr_distribution();
- calc.execute(this.identifications.get(0)
- .get_protein_liste());
+ calc.execute(this.identifications.get(0).get_protein_liste());
calc.print_peptide_fdr_distribution(output);
output.close();
output.open(this.getfileout().getAbsolutePath()
+ "_fdr_protein.txt");
calculation_protein_fdr_distribution calc2 = new calculation_protein_fdr_distribution();
- calc2.execute(this.identifications.get(0)
- .get_protein_liste());
+ calc2.execute(this.identifications.get(0).get_protein_liste());
calc2.print_protein_fdr_distribution(output);
output.close();
@@ -132,16 +128,17 @@ public class printing_base extends process {
throw new StopException("");
this.add_current_progress();
- if ((conf.get_export_masschroq())
- & (this.identifications.size() == 1)) {
+ if ((conf.get_export_masschroq()) & (this.identifications.size() == 1)) {
this.set_view("Printing MassChroQ xml file results");
Identification ident = this.identifications.get(0);
// modification isotopic
ident.filtered_match(new filter_isotopic_modifs(this.isotopic_mods));
-
- MassChroQmlOutput massChroQmlOutput = new MassChroQmlOutput(this.isotopic_mods, ident);
- FileOutputStream outputStream = new FileOutputStream(new File(this.getfileout()
- .getAbsolutePath() + ".masschroqML"));;
+
+ MassChroQmlOutput massChroQmlOutput = new MassChroQmlOutput(
+ this.isotopic_mods, ident);
+ FileOutputStream outputStream = new FileOutputStream(new File(this
+ .getfileout().getAbsolutePath() + ".masschroqML"));
+ ;
massChroQmlOutput.write(outputStream);
}
@@ -151,7 +148,8 @@ public class printing_base extends process {
}
- protected OdsDocWriter ods_specific_printing(String filename) throws Exception {
+ protected OdsDocWriter ods_specific_printing(String filename)
+ throws Exception {
return null;
}
--
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