# Conflicts:
#	CHANGELOG.md
#	met4j-mapping/pom.xml

Fix handling of weighted metabolic graphs as undirected: Weights are now copied to reverse edges. Correction added in DistanceMatrix and CompoundGraph apps for non-symmetric degree weighting under undirected option. For convenience, use of java8 lambda for weighting and weight processing.

See merge request !26

Add case for unorthodox format C1xx instead of Cxx. New test cases added

Feature/get distance manyto many

See merge request !18

Louison Fresnais authored Dec 07, 2022 and Clement Frainay committed Dec 07, 2022

Improve shortest path union computation using jgrapht many-to-many implementation. Provides utilities to easily get distance matrix from path computation. DefaultWeightingPolicy name changed to "Unweighted" policy, that need to be explicitly used for unweighted shortest path computation, rather than deprecated ShortestPath methods' parameters

Expand SBML Mapping. Expand mapping of chemical data onto metabolic networks (i.e. retrieving chemical entities within a metabolic network) As datasets sometimes provides only chemical names, provides fuzzy matching to get entries with most similar names

See merge request !24

reaction balance

See merge request !23

Feature/set ids from file

See merge request !22

See merge request !22

Feature/get seeds

See merge request !20

Identify sources and/or targets in whole model or in external/exchange compartment.

Finish 1.1.1

Use the super method in the constructor

create apps to export degree and chemical similarity weights for compound graphs

See merge request !19

Create RPAIRS-like tags from carbon-skeleton graph, with edge redundancy-based estimation of side transition

See merge request !16