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Commit 811c40ce authored by Clement Frainay's avatar Clement Frainay
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Merge tag '2.0.0' into develop 

release 2.0.0
parents 40cc4a3d 3f2746fc
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CHANGELOG.md
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......@@ -4,8 +4,21 @@ All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## Next Release
## 2.0.0
[met4j-toolbox] harmonization of the apps' parameters and names (check for compatibility issues)
[met4j-toolbox] improved documentation
[met4j-toolbox] add citation information to apps
[met4j-toolbox][reconstruction] add a new app to create community networks
[met4j-core] add support for meta-networks (community networks, holobionts, multi-organ model etc.)
[met4j-graph] Improve graph export:
- added a utility class for apps exporting graphs, removing duplicated code
- parameterizable export for handling custom attributes
- harmonization and support for all graph types
- node table export in apps
- tabulated as default (check for compatibility issues)
[met4j-io] Fix protein/gene names in FBC parser
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coverage/pom.xml
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......@@ -44,7 +44,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
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met4j-chemUtils/pom.xml
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......@@ -5,7 +5,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<properties>
......@@ -29,7 +29,7 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-core</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.mockito/mockito-all -->
<dependency>
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met4j-core/pom.xml
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......@@ -5,7 +5,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<scm>
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met4j-graph/pom.xml
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......@@ -5,7 +5,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<artifactId>met4j-graph</artifactId>
......@@ -35,7 +35,7 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-core</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
......@@ -45,12 +45,12 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-mathUtils</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-chemUtils</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>com.googlecode.json-simple</groupId>
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met4j-io/pom.xml
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......@@ -6,7 +6,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<artifactId>met4j-io</artifactId>
......@@ -25,7 +25,7 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-core</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.sbml.jsbml</groupId>
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met4j-mapping/pom.xml
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......@@ -4,7 +4,7 @@
<parent>
<artifactId>met4j</artifactId>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......@@ -19,7 +19,7 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-core</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>junit</groupId>
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met4j-mathUtils/pom.xml
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......@@ -5,7 +5,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
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met4j-reconstruction/pom.xml
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......@@ -41,7 +41,7 @@
<parent>
<artifactId>met4j</artifactId>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<modelVersion>4.0.0</modelVersion>
......@@ -61,7 +61,7 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-io</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>junit</groupId>
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met4j-toolbox/pom.xml
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......@@ -5,7 +5,7 @@
<parent>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</parent>
<artifactId>met4j-toolbox</artifactId>
......@@ -27,37 +27,37 @@
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-chemUtils</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-io</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-core</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-mathUtils</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-graph</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-mapping</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j-reconstruction</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.googlecode.json-simple/json-simple -->
<dependency>
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pom.xml
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<groupId>fr.inrae.toulouse.metexplore</groupId>
<artifactId>met4j</artifactId>
<version>1.5.5-SNAPSHOT</version>
<version>2.0.0-SNAPSHOT</version>
<packaging>pom</packaging>
<name>met4j</name>
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