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Created with Raphaël 2.2.010Jan30Jun24Mar1613227Feb17109330Jan1716131210943Nov2Aug19Jul422Jun161513987631May30131129Apr25221511131Mar3024Feb231715105222Dec17161592130Nov2625242318922Oct15141312987652130Sep292824232217161411109831Jul2927228763219Jun29May27Apr2322211530Mar252017139519Feb1817106230Jan282622161312719Dec181510854120Nov1918171476431Oct2722212016151413109732129Sep2625242319181716151211109853229Aug2827262521201864131Jul3025242322171610987427Jun26252423201817161312Delete .pydevprojectmastermasterDelete .projectDelete READMEAdd licenseDebug order or normalisation factorgit-svngit-svnintegrate Cedric comment on gene_name extraction and species name extraction from db description.Set default memory of snpeff to JAVA_HUGE_MEMAvoid X adding before library name when library name begin by a number.Do not crash on gff3 empty lineDelete useless functionTry to handle species in refseq database.Get species from swissprot definitionChange quote of renameRules component to pass on cluster env.Change orde of renameRules component to pass on cluster env.handle snpeff3.6 filescorrect test for Go and Keyword fileConfig nb thread for diamondAdd option --split to provide number of contigdebugparallelize tSNPannot and snpEffDebug GO check format.Add transdecoder as a component.Remove snpEff in loading function.Adapt to snpEff 4.2remove empty lineAdd SnpEff AnalysisDebug with source from prod.Add diamond alignerhelp update Differential Expression analysis: task 1638 (RNAbrowse)help update Differential Expression analysis: task 1638 (RNAbrowse)Remove output directory from shell execution to avoid directory to be removed when a rerun is called.updated varna.jar -> forna.jsDeub snp optimisation, Call correctly haplotype callerEnable and disable Run button when an analyse is runningdebug eyes openDerniere modif affichage PhilippeOptimize SNP calling.Useless work of pavelChangement orientation lib name + echelle log