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[demultiplexont.py]

Merged [demultiplexont.py]
nG6_ont_demultiplex into master
Merged Audrey Gibert requested to merge nG6_ont_demultiplex into master
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ui/nG6/pi1/analyzes/AlignmentStats.tpl
+ 4
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@@ -111,10 +111,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{assign var="mapped" value=" "|explode:$sample_results["default"].mapped}
{assign var="properlypaired" value=" "|explode:$sample_results["default"].properlypaired}
{assign var="singletons" value=" "|explode:$sample_results["default"].singletons}
<td>{$mapped[0]|number_format:0:' ':' '} {$mapped[1]}</td>
<td>{$properlypaired[0]|number_format:0:' ':' '} {$properlypaired[1]}</td>
<td>{$mapped[0]|number_format:0:' ':' '} {$mapped[1]}{$mapped[2]}</td>
<td>{$properlypaired[0]|number_format:0:' ':' '} {$properlypaired[1]}{$properlypaired[2]}</td>
<td>{$sample_results["default"].matemapped|number_format:0:' ':' '}</td>
<td>{$singletons[0]|number_format:0:' ':' '} {$singletons[1]}</td>
<td>{$singletons[0]|number_format:0:' ':' '} {$singletons[1]}{$singletons[2]}</td>
<td>{$sample_results["default"].mapch1|number_format:0:' ':' '}</td>
<td>{$sample_results["default"].supplementary|number_format:0:' ':' '}</td>
{if !isset($sample_results["default"]["pairOpticalDuplicates"]) }
@@ -122,7 +122,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<td>-</td>
<td>-</td>
{else}
<td>{($sample_results["default"].pairDuplicates*2 + $sample_results["default"].unpairDuplicates)|number_format:0:' ':' '} ({$sample_results["default"].percentDuplication}*100%)</td>
<td>{($sample_results["default"].pairDuplicates*2 + $sample_results["default"].unpairDuplicates)|number_format:0:' ':' '} ({$sample_results["default"].percentDuplication*100}%)</td>
<td>{$sample_results["default"].pairDuplicates|number_format:0:' ':' '}</td>
<td>{$sample_results["default"].pairOpticalDuplicates|number_format:0:' ':' '}</td>
{/if}