Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
ng6
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container Registry
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Admin message
A compter du 1er avril, attention à vos pipelines :
Nouvelles limitations de Docker Hub
Show more breadcrumbs
genotoul-bioinfo
ng6
Commits
c12898c5
Commit
c12898c5
authored
11 months ago
by
gsalin
Browse files
Options
Downloads
Patches
Plain Diff
correct unclassified way of identify them (changed over time)
parent
33167399
No related branches found
No related tags found
1 merge request
!160
update demulitplexont analysis in NG6
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
ui/nG6/pi1/analyzes/Demultiplex_ONT.tpl
+3
-4
3 additions, 4 deletions
ui/nG6/pi1/analyzes/Demultiplex_ONT.tpl
with
3 additions
and
4 deletions
ui/nG6/pi1/analyzes/Demultiplex_ONT.tpl
+
3
−
4
View file @
c12898c5
...
...
@@ -54,10 +54,9 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</thead>
<tbody>
{
foreach
from
=
$stats_metrics
key
=
fastq
item
=
fastq_metrics
}
{
if
$fastq
!=
"unclassified_noBarcode"
}
<tr><th>
{
$fastq
}
</th>
{/
if
}
{
if
$fastq
|
regex_replace
:
"/unclassified/"
:
""
==
$fastq
}
<tr><th>
{
$fastq
}
</th>
{/
if
}
{
foreach
from
=
$stats_headers
key
=
k
item
=
stat
}
{
if
$fastq
==
"unclassified_noBarcode"
}
{
if
$fastq
|
regex_replace
:
"/unclassified/"
:
""
!==
$fastq
}
{
if
$stat
==
"num_seqs"
}{
$totalNbSequenceswithoutBarcode
=
$totalNbSequenceswithoutBarcode
+
$fastq_metrics
[
$stat
]|
replace
:
','
:
''
|
replace
:
'.'
:
','
}{/
if
}
{
if
$stat
==
"sum_len"
}{
$totalLengthwithoutBarcode
=
$totalLengthwithoutBarcode
+
$fastq_metrics
[
$stat
]|
replace
:
','
:
''
|
replace
:
'.'
:
','
}{/
if
}
{
else
}
...
...
@@ -74,7 +73,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{
if
$stat
==
"N50"
}{
$totalN50
=
$totalN50
+
$fastq_metrics
[
$stat
]|
replace
:
','
:
''
|
replace
:
'.'
:
','
}{/
if
}
{/
if
}
{/
foreach
}
{
if
$fastq
!=
"unclassified_noBarcode"
}
</tr>
{/
if
}
{
if
$fastq
|
regex_replace
:
"/unclassified/"
:
""
==
$fastq
}
</tr>
{/
if
}
{/
foreach
}
</tbody>
{
if
$analyse_results
|@
count
>
1
}
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment