Update 2 files

- /env/binning.yml
- /env/Singularity_recipe_binning

env/Singularity_recipe_binning

@@ -7,20 +7,14 @@ env/binning.yml /
 
 %post
 # build-essential g++ are needed to pip install checkm2
-apt-get update && apt-get install -y procps build-essential g++ && apt-get clean -y
+apt-get update && apt-get install -y procps && apt-get clean -y
 /opt/conda/bin/mamba env create -q -f /binning.yml  && /opt/conda/bin/conda clean -a
 
 export PATH=/opt/conda/envs/binning/bin:$PATH
 
-# install Binette
-wget  https://github.com/genotoul-bioinfo/Binette/archive/refs/tags/v0.1.5.tar.gz 
-tar -xf v0.1.5.tar.gz 
-rm v0.1.5.tar.gz
-
-pip install Binette-0.1.5/
 
 %environment
-export PATH=/opt/conda/envs/binning/bin/:/checkm2/bin/:$PATH
+export PATH=/opt/conda/envs/binning/bin/:$PATH
 
 %runscript
      "$@"

env/binning.yml

@@ -5,27 +5,12 @@ channels:
   - conda-forge
 dependencies:
   - python>=3.6
-  - scikit-learn=0.23.2
-  - h5py=2.10.0
-  - numpy=1.23.5
-  - diamond>=2.0.4
-  - tensorflow >= 2.3.0
-  - lightgbm >= 3.2.1
   - pandas
-  - scipy
-  - prodigal>=2.6.3
-  - setuptools
-  - requests
-  - packaging
-  - tqdm
-  - networkx
   - pyfastx
-  - pyrodigal
-  - biopython
-  - matplotlib
   - metabat2=2.15
   - maxbin2=2.2.7
   - concoct=1.1.0
   - gtdbtk=2.1
   - drep=3.0.0
-  - pprodigal
+  - checkm2=1.0.2
+  - binette=1.0.1