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Created with Raphaël 2.2.011Apr1095226Mar181714131265325Feb2419181413121110431Jan292824237626Dec1518Nov15141386523Oct21181016Sep9Aug19Jul181629May20Mar156Feb210Oct9720Jun230May262523211612421Apr207628Mar242221824Feb73131Jan3026252423201918161413111096216Dec1514876230Nov25232115874228Oct2726252421defalut values for filtering in conf file227-filter-cont…227-filter-contig-lengthcorrect test on length for discard contigupdate filter stage to use size or cpmusage_doc : remove outdated GTDB downloading link, correct internal link, correct assembly resources, correct few english expressionscorrect genobioinfo module to ignore and add precision to check the last metagWGS version numbercorrect urlbinette 1.1.0 to 1.1.1update functionnal test for fxi filesAdd how to launch java module269-single-end269-single-endMerge branch 'update_binette' into 'devel'revert update python version and reomove binette installchange cut parameter for binette outputbinette 1.1.0 by biocontainerstart update binetteuse biocontener for hifi assemblynew-metamdbgnew-metamdbgadd metamdbg version in list of software + multiqcfor metamdbg call biocontainersdocs modif as 48e545f3add metamdbg version txt channelremove channel metamdbgadapt path output of last version of metamdbgupdate metamdbg script fornew versionadd module assembly with metamdbg and pass test. ! check the samtools versino after intall it metamdbg change to an older one !start add metamdbg in pipeMerge branch 'multiqc' into 'devel'v2.4-develv2.4-develupdate doc for gtdbtk archjoin bac120 and ar53 gtdbtk output in binnig resultsupdate doc output for gtdbtk archarch + bact in gtdbtk output #247Merge branch 'test_micromamba' into 'devel'remove runeruse micromamba to create binning imageuse micromamba to create metagwgs imageMerge branch '247-add-gtdb-archaea' into 'devel'gtdbtk allways give in output bacteria and archaea summarymodify input and output for gtdbtk archeegtdbtk on bins extract archee outputsMerge branch 'modifGTDBtk_db' into 'devel'gtdbtk db and mash dbgtdb_tk db version notemastermaster