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Hosts the different implementation of EDA model

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

search.app is used by package search, and implement search processes

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

Used to manage account, policies and sources. Access reserved to insylva administrators and source managers

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

Project used to manage security for In-Sylva Information System

Tropolink backend (API)

Notes and Devs as Software user

Java library for metabolic networks

Angular interface of the Cassiopée software

Production version of Cassiopée is available at https://cassiopee.g-eau.fr

Le portail de données phénologiques du réseau TEMPO permet la recherche et le téléchargement de données issues de différentes sources ouvertes ou soumises à autorisation.

Implements in R the Rothamsted RothC package. Adds useful functions.