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metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
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search.app is used by package search, and implement search processes
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panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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Used to manage account, policies and sources. Access reserved to insylva administrators and source managers
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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"
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Project used to manage security for In-Sylva Information System
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Angular interface of the Cassiopée software
Production version of Cassiopée is available at https://cassiopee.g-eau.fr
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Le portail de données phénologiques du réseau TEMPO permet la recherche et le téléchargement de données issues de différentes sources ouvertes ou soumises à autorisation.
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Implements in R the Rothamsted RothC package. Adds useful functions.
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