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MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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Decloud is a framework to remove clouds in Sentinel-2 images from joint Sentinel-1 (SAR) and Sentinel-2 (Optical) images or time series.
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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).
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A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.
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Run deep learning models from pytorch, tensorflow, keras, Caffe2, Microsoft Cognitive Toolkit, Apache MXNet, etc
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massXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.
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