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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

mineXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to visualize mass spectrometric data in their full MS^n depth. Sophisticated mouse-driven mass data integrations are easily performed.

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

GSpace is a simulator for large genomic data, based on a generation-by-generation coalescent that takes into account small population size, recombination, and isolation by distance.

massXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.

Coupling crops models with populations dynamics models in heterogeneous and dynamics landscapes.

C++ implementation of SpecOMS and new developments

libmass is a C++ static library that is referenced from other projects.

The libmass static library is designed to enshrine the non-gui functionalities needed by the following two projects:

msXpertSuite/massXpert; msXpertSuite/mineXpert2.

libmass has a companion GUI library, libmassgui , that is designed to enshrine the GUI functionalities needed by the same two projects above.

libmassgui is a C++ static library that is referenced from other projects. The libmassgui static library is designed to enshrine the gui functionalities needed by the following two projects:

msXpertSuite/massXpert; msXpertSuite/mineXpert2.

libmassgui has a companion GUI library, libmass , that is designed to enshrine the non-GUI functionalities needed by the same two projects above.

Mirror of https://gitlab.irstea.fr/remi.cresson/otbtf/