GitLab

Exploitation et maintenance du thésaurus INRAE, thésaurus ouvert et partagé couvrant les domaines de recherche d’INRAE. Il sert de référentiel au sein de l’institut pour indexer et annoter des documents, pages web, descriptions d’activités, jeux de d

AgreementMakerLight Eclipse Project

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

Java library for metabolic networks

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

A full description of X!TandemPipeline has been published in: Langella O, Valot B, Balliau T, Blein-Nicolas

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Collaborative repository of the ASTRE team for the ASF challenge. https://www6.inrae.fr/asfchallenge/

MassChroQ (Mass Chromatogram Quantification) is a powerfull and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry techniques.

A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129

Next Generation Sequencing Information System

DIVIS: a semantic DIstance to improve the VISualization of incomplete heterogeneous phenotypic datasets

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...