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FAIR-DATA management application stack for laboratory experiment

Projet regroupant les codes de l'outil opensilex, systèmes d'Information ouverts pilotés par des ontologies

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

Ce projet est un exemple de plugin utilisant le noyau de l'application des SOERE

MetaQTL is a Java package designed to perform the integration of data from the field of gene mapping experiments (e.g molecular markers, QTL, candidate genes, etc...). This package consists in a modular library and several programs written in pure Java. These programs can perform various tasks, including formatting, analyzing and visualizing data or results produced by MetaQTL.

Obsolete. This modular version was not easy to manage. See packages in orgemia.inra.fr/metexplore/cbm/met4j-flux

Java library for metabolic networks

https://lisc.pages.mia.inra.fr/leviathan/

Leviathan is an opinion dynamics model that combines processes of vanity and opinion propagation.

Miroir du projet kernel

Utility classes for java development

This project is the entrypoint for an Information System dedicated to manage a forest experimentation metadata catalog. It relies on a metadata standard available at URL https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/ELXRGY.

Geometry computing library for the ImageJ software.

GWT experiments: minimum and basic dependencies to run on Tomcat along with code quality checkers.