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genotoul-bioinfo / metagWGS
GNU General Public License v3.0 onlymetagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
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GeT-nextflow-NGL-Bi / template-nf
CeCILL Free Software License Agreement v2.1Updated -
seqOccIn / HiFi metabarcoding analysis
GNU General Public License v3.0 or laterUpdated -
GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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scripts to remap markers as pairs of bait sequences or context sequences.
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Nextflow pipeline to extract syntenic blocks using the MCScanX program.
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GEAPSI-Bioinfo / pipeline / specifics_Ortho_KB
MIT LicenseNextflow pipeline creating a Neo4j Ortho_KB database.
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LIPME / Nicknames Pipeline
Apache License 2.0A pipeline to compute correspondance tables between genome annotations
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