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Pierre Nicolas / Multiple
GNU General Public License v3.0 or laterMultiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.
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Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)
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RECORD platform Web Development - espace de développements Web de la plate-forme RECORD effectués autour de modèles RECORD (prototype d'outil, réutilisabilité de code).
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Code de l'ESP32 utilisé dans le cadre du projet détecteur de CO2 https://jouy.pepiniere.inrae.fr/#!/projects/detecteur-co2-pour-inciter-a-l-aeration-des-locaux
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Gauthier Quesnel / baryonyx
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Joseph Tran / getSeqFlankBlatHit
GNU General Public License v2.0 or laterGetting sequences flanking blat hits / Extraction des séquences flanquantes les hits blat.
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Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.
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Pole MIAME / Acoustic / acoustique
GNU Lesser General Public License v2.1 onlyUpdated -
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Scripts used in: "Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints" S. Ben-Sadoun, A. Fugeray-Scarbel, J. Auzanneau, G. Charmet, S. Lemarié, S. Bouchet
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R'MES is a tool for studying word frequencies in biological sequences.
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