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Automatic protocol for the constitution of spatio-temporal and thematic corpora for the Herelles project.

Notebooks Jupyter

Comparative analysis of NLP neural methods for the entity normalization task in the biological field.

Le projet IlluminaMetabarcodingPipeline a pour but de traiter des séquences issues de séquençage à très haut débit Illumina MySeq et d'en découvrir des modèles

Live Mouse Tracker analysis

Companion code to the publication 'Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy', Ravel et al.

Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).

Le projet IlluminaMetabarcodingPipeline a pour but de traiter des séquences issues de séquençage à très haut débit Illumina MySeq et d'en découvrir des modèles

About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.

Generate a population of individuals with SV, with paried end reads for each