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Pierre Nicolas / Multiple
GNU General Public License v3.0 or laterMultiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.
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Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.
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Query a hamster database of time-tracking data to perform searches, data-analysis or modifications.
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Multiple Factor Analysis (MFA) of Knowledge-Attitude-Practice survey responses of Laos' farmers on Antimicrobial resistance.
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Some scripts for the methylation analysis of the ChickStress project.
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inter_CATI_omics / hackathon_shiny_2020
GNU General Public License v3.0 onlyAtelier développement d’une application interactive Shiny lors du hackathon inter-CATI omics 2020
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Pipeline to analyze gene expression and organellar gene expression specificities (C-to-U RNA editing, splicing and processing) from RNAseq data. It conducts mapping-counting steps and differential analysis for gene expression, splicing and editing.
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Model of the dynamics of population for French farmers that includes two processes, an installation process and a retirement process. Model calibrated by ABC.
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Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)
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Atelier Recherche Reproductible INRAE - Pôle IMABS. 5 février 2021
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A quick overview of the changes of Covid-19 mortality in the most affected countries of the European Union + the United Kingdom and of Africa. https://umr-astre.pages.mia.inra.fr/covid19-mortality/
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R codes to run Decafs on the B. Subtilis analysis RNA dataset of P. Nicolas et al. 2009
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