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Orfeo ToolBox / otbtf
Apache License 2.0The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.
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Gauthier Quesnel / irritator
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URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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PAPPSO / tandemng-mass
Artistic License 1.0 (Perl)Updated -
PAPPSO / MassChroQ
GNU General Public License v3.0 onlyMassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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PAPPSO / libodsstream
OtherLightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream
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PAPPSO / massxpert2
GNU General Public License v3.0 onlymassXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.
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PAPPSO / pappsomspp
GNU General Public License v3.0 onlyPAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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PAPPSO / PAPPSOms-tools
GNU General Public License v3.0 onlyset of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
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A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).
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LOZAC H LOIC / AgriSoilMoisture
Apache License 2.0Computes soil moisture over agricultural areas
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PAPPSO / libmassgui
GNU General Public License v3.0 or laterlibmassgui is a C++ static library that is referenced from other projects. The libmassgui static library is designed to enshrine the gui functionalities needed by the following two projects:
msXpertSuite/massXpert; msXpertSuite/mineXpert2.
libmassgui has a companion GUI library, libmass , that is designed to enshrine the non-GUI functionalities needed by the same two projects above.
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PAPPSO / libmass
GNU General Public License v3.0 onlylibmass is a C++ static library that is referenced from other projects.
The libmass static library is designed to enshrine the non-gui functionalities needed by the following two projects:
msXpertSuite/massXpert; msXpertSuite/mineXpert2.libmass has a companion GUI library, libmassgui , that is designed to enshrine the GUI functionalities needed by the same two projects above.
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PAPPSO / specoms
GNU General Public License v3.0 onlyC++ implementation of SpecOMS and new developments
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PAPPSO / Mseater
GNU General Public License v3.0 onlyUpdated -
Nathalie Rousse / erecord
GNU General Public License v3.0 onlyUpdated -
SIMONCINI DAVID / pils
GNU General Public License v3.0 onlyUpdated