Explore projects
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PAPPSO / massXpert
GNU General Public License v3.0 onlymassXpert (of the http://www.msxpertsuite.org software collection) is a program that allows one to define brand new polymer chemistry definitions, to use them to define polymer sequences and to perform a large array of chemical simulations on them.
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GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)
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A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).
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R'MES is a tool for studying word frequencies in biological sequences.
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PAPPSO / libmass
GNU General Public License v3.0 onlylibmass is a C++ static library that is referenced from other projects.
The libmass static library is designed to enshrine the non-gui functionalities needed by the following two projects:
msXpertSuite/massXpert; msXpertSuite/mineXpert2.libmass has a companion GUI library, libmassgui , that is designed to enshrine the GUI functionalities needed by the same two projects above.
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Jerome Duriez / yademoca
GNU General Public License v2.0 or laterPour projets SeaTech sur la Fast Marching Method
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PAPPSO / libmassgui
GNU General Public License v3.0 or laterlibmassgui is a C++ static library that is referenced from other projects. The libmassgui static library is designed to enshrine the gui functionalities needed by the following two projects:
msXpertSuite/massXpert; msXpertSuite/mineXpert2.
libmassgui has a companion GUI library, libmass , that is designed to enshrine the non-GUI functionalities needed by the same two projects above.
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pubilc repository for the Ambhas groundwater model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/ambhas_cpp/
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pubilc repository for the PumpPotential pump flow model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/pump-potential/
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pubilc repository for the GroundWaterNitrogen nitrogen content in groundwater model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/groundwaternitrogen/
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pubilc repository for the ASCROM crop model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/ascrom/
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pubilc repository for the MF1_2 farm model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/mf1_2/
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PAPPSO / tandemng-mass
Artistic License 1.0 (Perl)Updated -
PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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PAPPSO / PAPPSOms-tools
GNU General Public License v3.0 onlyset of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
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umr-tetis / decloud
Apache License 2.0Decloud is a framework to remove clouds in Sentinel-2 images from joint Sentinel-1 (SAR) and Sentinel-2 (Optical) images or time series.
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GSpace is a simulator for large genomic data, based on a generation-by-generation coalescent that takes into account small population size, recombination, and isolation by distance.
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PAPPSO / pappsomspp
GNU General Public License v3.0 onlyPAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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