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Pour projets SeaTech sur la Fast Marching Method

C++ implementation of SpecOMS and new developments

i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

PDE using Dolfin

This project is a custom version of CB-Geo MPM.

A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

Life game (Conway) using vle::discrete_time cells and vle.generic.builder Builder model to generate cells and their connexions

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.

GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)

Species Perscrutandis Enixe Locis Locabuntur.

massXpert (of the http://www.msxpertsuite.org software collection) is a program that allows one to define brand new polymer chemistry definitions, to use them to define polymer sequences and to perform a large array of chemical simulations on them.

PAPPSOms++ is a comprehensive C++ library including usefull functions to handle proteomics data (spectrum, peptides, ions, isotopes).

MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....