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PAPPSO / PAPPSOms-tools
GNU General Public License v3.0 onlyset of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
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URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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ROUCHY LEO / TnetRUI
GNU General Public License v3.0 or laterUpdated -
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select or stitch the best image for each uplot and save it in "selected_images" directory
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UMR-ASTRE / mapMCDA
GNU General Public License v3.0 onlyProduce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/
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DipSO / Bridge DataINRAE Nextcloud
GNU Affero General Public License v3.0App Nextcloud permettant de publier des fichiers du Nextcloud INRAE vers DataINRAE
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metagenopolis / meteor
GNU General Public License v3.0 onlyMeteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level
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SK8 / sk8-apps / ARA / RIVERLY / MAKAHO
GNU Affero General Public License v3.0MAKAHO (pour MAnn-Kendall Analysis of Hydrological Observations) est un système de visualisation cartographique interactif permettant d’examiner les tendances présentes dans les données des stations hydrométriques aux débits peu influencés par les actions humaines. Le test de Mann-Kendall permet d’analyser la significativité des tendances de variables hydrologiques sur les différentes composantes du régime des cours d'eau (étiages, moyennes-eaux, crues), à mettre ensuite en relation avec les impacts du changement climatique sur l’hydrologie de surface.
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SK8 / sk8-apps / ARA / RIVERLY / cruesR
GNU Affero General Public License v3.0A shiny application that make time series events selection and modification simpler.
Lien vers l'application : https://crues-r.sk8.inrae.fr
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PAPPSO / massxpert2
GNU General Public License v3.0 onlymassXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.
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BUCHET SAMUEL / tb2_twophase
MIT LicenseA bi-objective optimization solver for graphical models.
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Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.
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PAPPSO / libXpertMass
GNU General Public License v3.0 or laterUpdated -
Dynafor / Apps / HedgeTools
MIT LicenseUpdated