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A pipeline to compute correspondance tables between genome annotations

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

Pipeline for annotating VHHs from NGS sequences.

scripts to remap markers as pairs of bait sequences or context sequences.

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

Some scripts for the methylation analysis of the ChickStress project.

Some scripts for the methylation analysis of the ChickStress project.

GEGA - Gallus Enriched Gene Annotation - Easily explore the richness of the chicken genome

All scripts concerning GBS analysis

Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742

A gene finding software for eukaryotic and prokaryotic organisms.

DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.

Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics