Explore projects

GWT experiments: minimum and basic dependencies to run on Tomcat along with code quality checkers.

Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes

Site web de MIAT, avec wowchemy (hugo). Pour voir la version de dev: https://miat-com.pages.mia.inra.fr/miat_website

Java library for metabolic networks

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Hosts the different implementation of EDA model

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

This project is the entrypoint for an Information System dedicated to manage a forest experimentation metadata catalog. It relies on a metadata standard available at URL https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/ELXRGY.

Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

On-line doctoral training on EMULSION

Notes and Devs as Software user