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On-line doctoral training on EMULSION

Notes and Devs as Software user

Semi-supervised learning with pseudo-labeling for regulatory sequence prediction

Caulifinder : a pipeline for automatic detection and annotation of caulimovirid endogenous viral elements in plant genomes

Site web de MIAT, avec wowchemy (hugo). Pour voir la version de dev: https://miat-com.pages.mia.inra.fr/miat_website

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Contribution à la réalisation du "pilote" INRAE, dans le cadre du programme européen GraspOS

Replication repository for the article "A comprehensive review and benchmark of differential analysis tools for Hi-C data"

Suivi des Applications jaVa d'Agroclim (Documentation en ligne).

Pipeline Nextflow

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Tropolink backend (API)