Explore projects

search a genome for NBS-LRR (NLR) disease resistance genes based on the presence of the NB-ARC domain using the consensus sequence of the Pfam HMM profile (PF00931) and class specific consensus sequences built from Vitis vinifera. https://doi.org/10.

Miroir du projet kernel

Just a project to keep the material used to learn Slurm

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Creation and provisioning a Mac OS VirtualBox with R4 tools chain and use it as a GitLab Runner.

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Tool to submit a Vagrant box using the Vagrant Cloud API.

Pipeline to analyze gene expression and organellar gene expression specificities (C-to-U RNA editing, splicing and processing) from RNAseq data. It conducts mapping-counting steps and differential analysis for gene expression, splicing and editing.

Code for Learning Cost Function Networks

Hackathon snakemake 2020