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MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

Pipeline Nextflow

Obtaining cell-specific metabolic models through enumeration with DEXOM

i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

search.app is used by package search, and implement search processes

code R pour le calcul des valeurs de shapley d'un modèle d'apprentissage dans le cadre de la cartographie

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/

Présentation au format RMarkdown réalisée avec 'Xaringan' de formation au package R 'airGRiwrm'

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.