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Intern development of the methods for microbial guild inference and clustering
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RECORD platform Web Development - espace de développements Web de la plate-forme RECORD effectués autour de modèles RECORD (prototype d'outil, réutilisabilité de code).
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SIMONCINI DAVID / pils
GNU General Public License v3.0 onlyUpdated -
Gauthier Quesnel / baryonyx
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Sylvain Jasson / amap
GNU General Public License v3.0 onlyAnother multidimensional analysis packag : Hierarchical clustering and principal component analysis with both general and robusts methods
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PAPPSO / MassChroQ
GNU General Public License v3.0 onlyMassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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Scripts used in: "Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints" S. Ben-Sadoun, A. Fugeray-Scarbel, J. Auzanneau, G. Charmet, S. Lemarié, S. Bouchet
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GroupingProtein does filtering, protein inference and grouping of mass MS/MS identification result (thousands of samples, high resolution mass spectrometers)
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PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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Pole MIAME / Acoustic / acoustique
GNU Lesser General Public License v2.1 onlyUpdated -
PAPPSO / PAPPSOms-tools
GNU General Public License v3.0 onlyset of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
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