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  • URGI-Anagen / TE_finder

    CeCILL Free Software License Agreement v2.0

    A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

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  • PAPPSO / libmass

    GNU General Public License v3.0 only

    libmass is a C++ static library that is referenced from other projects.

    The libmass static library is designed to enshrine the non-gui functionalities needed by the following two projects:

    msXpertSuite/massXpert; msXpertSuite/mineXpert2.

    libmass has a companion GUI library, libmassgui , that is designed to enshrine the GUI functionalities needed by the same two projects above.

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  • PAPPSO / PAPPSOms-tools

    GNU General Public License v3.0 only

    set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

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  • PAPPSO / massxpert2

    GNU General Public License v3.0 only

    massXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.

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  • Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

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  • Orfeo ToolBox / otbtf

    Apache License 2.0

    The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.

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  • PAPPSO / MassChroQ

    GNU General Public License v3.0 only

    MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

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  • PAPPSO / tandemng-mass

    Artistic License 1.0 (Perl)
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  • This project is a custom version of CB-Geo MPM.

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  • A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

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  • PAPPSO / pappsomspp

    GNU General Public License v3.0 only

    PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

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  • PAPPSO / i2MassChroQ

    GNU General Public License v3.0 only

    i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

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