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scripts to remap markers as pairs of bait sequences or context sequences.
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Pierre Nicolas / Multiple
GNU General Public License v3.0 or laterMultiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.
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Some scripts for the methylation analysis of the ChickStress project.
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Some scripts for the methylation analysis of the ChickStress project.
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bios4biol / intronSeeker
GNU General Public License v3.0 or laterUpdated -
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BARIC / Family Companion
CeCILL Free Software License Agreement v2.0Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742
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Sebastien Carrere / Family Companion
CeCILL Free Software License Agreement v2.0Updated -
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DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.
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Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics
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GenEpi / Tools / CpG island detection
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Martine Da-Rocha / CleaveLand_all_isomer
GNU General Public License v3.0 onlyModified of the code CleaveLand to have the results for all isoforms. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.
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