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Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
Topics: containerUpdated -
Some scripts for the methylation analysis of the ChickStress project.
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Mouhamadou Ba / pesv-tm
Apache License 2.0Archived 1Updated -
Bibliome / pesv-tm
Apache License 2.0Updated -
Sebastien Carrere / Family Companion
CeCILL Free Software License Agreement v2.0Updated -
BARIC / Family Companion
CeCILL Free Software License Agreement v2.0Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742
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Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics
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Martine Da-Rocha / CleaveLand_all_isomer
GNU General Public License v3.0 onlyModified of the code CleaveLand to have the results for all isoforms. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.
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A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129
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Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
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Some scripts for the methylation analysis of the ChickStress project.
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GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.
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scripts to remap markers as pairs of bait sequences or context sequences.
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report from a BAM alignment the number of BX:Z: tags shared between to blocks of given size
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