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genotoul-bioinfo / metagWGS
GNU General Public License v3.0 onlymetagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
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GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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Omnicrobe / Omnicrobe database
Apache License 2.0Updated -
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holooligo / Omnicrobe database
Apache License 2.0Updated -
Angular interface of the Cassiopée software
Production version of Cassiopée is available at https://cassiopee.g-eau.fr
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Agroclim / Indicators / Bibliothèque Java
GNU General Public License v3.0 or laterBibliothèque Java pour calculer des indicateurs agro- et éco-climatiques à partir de données climatiques journalières ou horaires et des donnés phénologiques. Un des modèles phénologiques peut être utilisé à la place des données phénologiques. (Documentation en ligne)
Topics: JavaUpdated