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List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Pipeline Nextflow

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

basis for development of interactive population dynamics web applications

Experimental data vizualization for FAANG.

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

On-line doctoral training on EMULSION

Génération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"