Explore projects
-
DeCrypt / PDMP-model
GNU General Public License v3.0 or laterImplementation of a PDMP model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).
Updated -
Nathalie Vialaneix / Benchmarking GNN for phenotype prediction
GNU General Public License v3.0 or laterUpdated -
MANA: mMoA identification Assisted by modelling and Network Analysis.
Code and test case for the following article :
A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques
Updated -
MOURAD Raphael / DeepGNN
MIT LicenseDeepGNN: Semi-supervised deep learning with graph neural network for cross-species regulatory sequence prediction
Updated -
MOURAD Raphael / DeepSSL
MIT LicenseSemi-supervised learning with pseudo-labeling for regulatory sequence prediction
Updated -
SubtilNet / Arboreto
BSD 3-Clause "New" or "Revised" LicenseA fork of GRNBoost2 arboreto from https://github.com/aertslab/arboreto.git at 11/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression.
Updated -
Updated
-
Updated
-
Modifications of GTNash for code readability - readability is entirely subjective! The original functionality should remain the same.
Updated -
Pherosensor / pherosensor-toolbox
GNU General Public License v3.0 or laterToolbox for the inverse problem solution to identify sources of pheromone emission.
Updated -
Updated
-
Updated
-
SubtilNet / DeepSEM
MIT LicenseA fork of Deep learning VAE DeepSEM from https://github.com/HantaoShu/DeepSEM.git at 18/03/2024. The idea here is to change the code to be able to extract the models and make goodness of fit with predicted expression
Updated -
About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.
Updated -
Pole MIAME / Acoustic / Acoustic v2
GNU General Public License v3.0 onlyUpdated -
Sessions Machine et Deep Learning - module Agrotic/Datascience - 03/12 et 07/12
Updated -
Updated
-
Updated
-
Atelier Recherche Reproductible INRAE - Pôle IMABS. 5 février 2021
Updated